Gene : evm_27.TU.AmTr_v1.0_scaffold00004.242 A. trichopoda v1.0
Defline:  (1 of 1) PTHR21631:SF13 - MITOCHONDRIAL 2-METHYLISOCITRATE LYASE Genomic Order:  241
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00004.242 Secondary Identifier:  ? PAC:31550368
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLYOXYLATE-BYPASS Amborella trichopoda pathologic  
Atrichopoda PWY-561 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00004.242 0.5kb upstream 0.5kb upstream 2150 true AmTr_v1.0_scaffold00004: 6115459-6117608 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00004: 6117109-6117608 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 0.5kb downstream 0.5kb downstream 2150 true AmTr_v1.0_scaffold00004: 6114959-6117108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00004: 6114959-6115458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 1.0kb upstream 1.0kb upstream 2650 true AmTr_v1.0_scaffold00004: 6115459-6118108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00004: 6117109-6118108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 1.0kb downstream 1.0kb downstream 2650 true AmTr_v1.0_scaffold00004: 6114459-6117108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00004: 6114459-6115458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 2.0kb upstream 2.0kb upstream 3650 true AmTr_v1.0_scaffold00004: 6115459-6119108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00004: 6117109-6119108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 2.0kb downstream 2.0kb downstream 3650 true AmTr_v1.0_scaffold00004: 6113459-6117108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00004: 6113459-6115458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 5.0kb upstream 5.0kb upstream 6650 true AmTr_v1.0_scaffold00004: 6115459-6122108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00004: 6117109-6122108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 5.0kb downstream 5.0kb downstream 6650 true AmTr_v1.0_scaffold00004: 6110459-6117108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00004: 6110459-6115458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 10.0kb upstream 10.0kb upstream 11650 true AmTr_v1.0_scaffold00004: 6115459-6127108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00004: 6117109-6127108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 10.0kb downstream 10.0kb downstream 11650 true AmTr_v1.0_scaffold00004: 6105459-6117108 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.242 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00004: 6105459-6115458 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122049985 5273 Angiosperm View MSA
121347561 5274 Embryophyte View MSA
123428552 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain