Gene : evm_27.TU.AmTr_v1.0_scaffold00004.237 A. trichopoda v1.0
Defline:  (1 of 3) 4.1.3.1 - Isocitrate lyase / Isocitritase Genomic Order:  236
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00004.237 Secondary Identifier:  ? PAC:31550501
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLYOXYLATE-BYPASS Amborella trichopoda pathologic  
Atrichopoda PWY-561 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00004.237 0.5kb upstream 0.5kb upstream 2692 true AmTr_v1.0_scaffold00004: 5821461-5824152 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00004: 5823653-5824152 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 0.5kb downstream 0.5kb downstream 2692 true AmTr_v1.0_scaffold00004: 5820961-5823652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00004: 5820961-5821460 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 1.0kb upstream 1.0kb upstream 3192 true AmTr_v1.0_scaffold00004: 5821461-5824652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00004: 5823653-5824652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 1.0kb downstream 1.0kb downstream 3192 true AmTr_v1.0_scaffold00004: 5820461-5823652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00004: 5820461-5821460 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 2.0kb upstream 2.0kb upstream 4192 true AmTr_v1.0_scaffold00004: 5821461-5825652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00004: 5823653-5825652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 2.0kb downstream 2.0kb downstream 4192 true AmTr_v1.0_scaffold00004: 5819461-5823652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00004: 5819461-5821460 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 5.0kb upstream 5.0kb upstream 7192 true AmTr_v1.0_scaffold00004: 5821461-5828652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00004: 5823653-5828652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 5.0kb downstream 5.0kb downstream 7192 true AmTr_v1.0_scaffold00004: 5816461-5823652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00004: 5816461-5821460 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 10.0kb upstream 10.0kb upstream 12192 true AmTr_v1.0_scaffold00004: 5821461-5833652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00004: 5823653-5833652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 10.0kb downstream 10.0kb downstream 12192 true AmTr_v1.0_scaffold00004: 5811461-5823652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.237 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00004: 5811461-5821460 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122049985 5273 Angiosperm View MSA
121347561 5274 Embryophyte View MSA
123428552 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain