Gene : Medtr8g465870 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Description:  lycopene beta/epsilon cyclase
Genomic Order:  2777 Name:  ? Medtr8g465870
Secondary Identifier:  ? PAC:31071603
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CAROTENOID-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5943 Medicago truncatula pathologic  
Mtruncatula PWY-5947 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g465870 0.5kb upstream 0.5kb upstream 6733   true chr8: 23488817-23495549 Medicago truncatula
Medtr8g465870 0.5kb upstream 0.5kb upstream 500   false chr8: 23488817-23489316 Medicago truncatula
Medtr8g465870 0.5kb downstream 0.5kb downstream 6733   true chr8: 23489317-23496049 Medicago truncatula
Medtr8g465870 0.5kb downstream 0.5kb downstream 500   false chr8: 23495550-23496049 Medicago truncatula
Medtr8g465870 1.0kb upstream 1.0kb upstream 7233   true chr8: 23488317-23495549 Medicago truncatula
Medtr8g465870 1.0kb upstream 1.0kb upstream 1000   false chr8: 23488317-23489316 Medicago truncatula
Medtr8g465870 1.0kb downstream 1.0kb downstream 7233   true chr8: 23489317-23496549 Medicago truncatula
Medtr8g465870 1.0kb downstream 1.0kb downstream 1000   false chr8: 23495550-23496549 Medicago truncatula
Medtr8g465870 2.0kb upstream 2.0kb upstream 8233   true chr8: 23487317-23495549 Medicago truncatula
Medtr8g465870 2.0kb upstream 2.0kb upstream 2000   false chr8: 23487317-23489316 Medicago truncatula
Medtr8g465870 2.0kb downstream 2.0kb downstream 8233   true chr8: 23489317-23497549 Medicago truncatula
Medtr8g465870 2.0kb downstream 2.0kb downstream 2000   false chr8: 23495550-23497549 Medicago truncatula
Medtr8g465870 5.0kb upstream 5.0kb upstream 11233   true chr8: 23484317-23495549 Medicago truncatula
Medtr8g465870 5.0kb upstream 5.0kb upstream 5000   false chr8: 23484317-23489316 Medicago truncatula
Medtr8g465870 5.0kb downstream 5.0kb downstream 11233   true chr8: 23489317-23500549 Medicago truncatula
Medtr8g465870 5.0kb downstream 5.0kb downstream 5000   false chr8: 23495550-23500549 Medicago truncatula
Medtr8g465870 10.0kb upstream 10.0kb upstream 16233   true chr8: 23479317-23495549 Medicago truncatula
Medtr8g465870 10.0kb upstream 10.0kb upstream 10000   false chr8: 23479317-23489316 Medicago truncatula
Medtr8g465870 10.0kb downstream 10.0kb downstream 16233   true chr8: 23489317-23505549 Medicago truncatula
Medtr8g465870 10.0kb downstream 10.0kb downstream 10000   false chr8: 23495550-23505549 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307883 5265 Fabidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.114        
cufflinks 11.871     High High
cufflinks 7.0        
cufflinks 1.132       Low
cufflinks 11.18     High High
cufflinks 1.271       Low
cufflinks 3.237        
cufflinks 9.626     High  
cufflinks 4.596        

0 Strain