Gene : Medtr8g101900 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR10509//PTHR10509:SF29 - O-METHYLTRANSFERASE-RELATED Description:  caffeoyl-CoA O-methyltransferase
Genomic Order:  5402 Name:  ? Medtr8g101900
Secondary Identifier:  ? PAC:31073952
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1121 Medicago truncatula pathologic  
Mtruncatula PWY-361 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g101900 0.5kb upstream 0.5kb upstream 1983   true chr8: 42829329-42831311 Medicago truncatula
Medtr8g101900 0.5kb upstream 0.5kb upstream 500   false chr8: 42829329-42829828 Medicago truncatula
Medtr8g101900 0.5kb downstream 0.5kb downstream 1983   true chr8: 42829829-42831811 Medicago truncatula
Medtr8g101900 0.5kb downstream 0.5kb downstream 500   false chr8: 42831312-42831811 Medicago truncatula
Medtr8g101900 1.0kb upstream 1.0kb upstream 2483   true chr8: 42828829-42831311 Medicago truncatula
Medtr8g101900 1.0kb upstream 1.0kb upstream 1000   false chr8: 42828829-42829828 Medicago truncatula
Medtr8g101900 1.0kb downstream 1.0kb downstream 2483   true chr8: 42829829-42832311 Medicago truncatula
Medtr8g101900 1.0kb downstream 1.0kb downstream 1000   false chr8: 42831312-42832311 Medicago truncatula
Medtr8g101900 2.0kb upstream 2.0kb upstream 3483   true chr8: 42827829-42831311 Medicago truncatula
Medtr8g101900 2.0kb upstream 2.0kb upstream 2000   false chr8: 42827829-42829828 Medicago truncatula
Medtr8g101900 2.0kb downstream 2.0kb downstream 3483   true chr8: 42829829-42833311 Medicago truncatula
Medtr8g101900 2.0kb downstream 2.0kb downstream 2000   false chr8: 42831312-42833311 Medicago truncatula
Medtr8g101900 5.0kb upstream 5.0kb upstream 6483   true chr8: 42824829-42831311 Medicago truncatula
Medtr8g101900 5.0kb upstream 5.0kb upstream 5000   false chr8: 42824829-42829828 Medicago truncatula
Medtr8g101900 5.0kb downstream 5.0kb downstream 6483   true chr8: 42829829-42836311 Medicago truncatula
Medtr8g101900 5.0kb downstream 5.0kb downstream 5000   false chr8: 42831312-42836311 Medicago truncatula
Medtr8g101900 10.0kb upstream 10.0kb upstream 11483   true chr8: 42819829-42831311 Medicago truncatula
Medtr8g101900 10.0kb upstream 10.0kb upstream 10000   false chr8: 42819829-42829828 Medicago truncatula
Medtr8g101900 10.0kb downstream 10.0kb downstream 11483   true chr8: 42829829-42841311 Medicago truncatula
Medtr8g101900 10.0kb downstream 10.0kb downstream 10000   false chr8: 42831312-42841311 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314949 5265 Fabidae View MSA
124070229 5270 Rosid View MSA
123751667 5271 Pentapetalae View MSA
122774127 5272 Eudicot View MSA
122050348 5273 Angiosperm View MSA
121311864 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low Low
cufflinks 0.017     Low  
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.056     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.049     Low  
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain