Gene : Medtr7g090150 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Description:  chromoplast lycopene beta-cyclase
Genomic Order:  4260 Name:  ? Medtr7g090150
Secondary Identifier:  ? PAC:31083564
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CAROTENOID-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5943 Medicago truncatula pathologic  
Mtruncatula PWY-5947 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g090150 0.5kb upstream 0.5kb upstream 1997 true chr7: 35385188-35387184 Medicago truncatula
Medtr7g090150 0.5kb upstream 0.5kb upstream 500 false chr7: 35385188-35385687 Medicago truncatula
Medtr7g090150 0.5kb downstream 0.5kb downstream 1997 true chr7: 35385688-35387684 Medicago truncatula
Medtr7g090150 0.5kb downstream 0.5kb downstream 500 false chr7: 35387185-35387684 Medicago truncatula
Medtr7g090150 1.0kb upstream 1.0kb upstream 2497 true chr7: 35384688-35387184 Medicago truncatula
Medtr7g090150 1.0kb upstream 1.0kb upstream 1000 false chr7: 35384688-35385687 Medicago truncatula
Medtr7g090150 1.0kb downstream 1.0kb downstream 2497 true chr7: 35385688-35388184 Medicago truncatula
Medtr7g090150 1.0kb downstream 1.0kb downstream 1000 false chr7: 35387185-35388184 Medicago truncatula
Medtr7g090150 2.0kb upstream 2.0kb upstream 3497 true chr7: 35383688-35387184 Medicago truncatula
Medtr7g090150 2.0kb upstream 2.0kb upstream 2000 false chr7: 35383688-35385687 Medicago truncatula
Medtr7g090150 2.0kb downstream 2.0kb downstream 3497 true chr7: 35385688-35389184 Medicago truncatula
Medtr7g090150 2.0kb downstream 2.0kb downstream 2000 false chr7: 35387185-35389184 Medicago truncatula
Medtr7g090150 5.0kb upstream 5.0kb upstream 6497 true chr7: 35380688-35387184 Medicago truncatula
Medtr7g090150 5.0kb upstream 5.0kb upstream 5000 false chr7: 35380688-35385687 Medicago truncatula
Medtr7g090150 5.0kb downstream 5.0kb downstream 6497 true chr7: 35385688-35392184 Medicago truncatula
Medtr7g090150 5.0kb downstream 5.0kb downstream 5000 false chr7: 35387185-35392184 Medicago truncatula
Medtr7g090150 10.0kb upstream 10.0kb upstream 11497 true chr7: 35375688-35387184 Medicago truncatula
Medtr7g090150 10.0kb upstream 10.0kb upstream 10000 false chr7: 35375688-35385687 Medicago truncatula
Medtr7g090150 10.0kb downstream 10.0kb downstream 11497 true chr7: 35385688-35397184 Medicago truncatula
Medtr7g090150 10.0kb downstream 10.0kb downstream 10000 false chr7: 35387185-35397184 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303951 5265 Fabidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.917     High  
cufflinks 53.372     High High
cufflinks 43.662     High  
cufflinks 7.442       Low
cufflinks 54.968     High High
cufflinks 6.219       Low
cufflinks 10.934     High  
cufflinks 38.95     High  
cufflinks 9.814        

0 Strain