Gene : Medtr6g087000 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.7.11.12 - cGMP-dependent protein kinase / PKG II Description:  cyclic nucleotide-binding domain protein
Genomic Order:  3665 Name:  ? Medtr6g087000
Secondary Identifier:  ? PAC:31102976
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g087000 0.5kb upstream 0.5kb upstream 9489 true chr6: 33528353-33537841 Medicago truncatula
Medtr6g087000 0.5kb upstream 0.5kb upstream 500 false chr6: 33537342-33537841 Medicago truncatula
Medtr6g087000 0.5kb downstream 0.5kb downstream 9489 true chr6: 33527853-33537341 Medicago truncatula
Medtr6g087000 0.5kb downstream 0.5kb downstream 500 false chr6: 33527853-33528352 Medicago truncatula
Medtr6g087000 1.0kb upstream 1.0kb upstream 9989 true chr6: 33528353-33538341 Medicago truncatula
Medtr6g087000 1.0kb upstream 1.0kb upstream 1000 false chr6: 33537342-33538341 Medicago truncatula
Medtr6g087000 1.0kb downstream 1.0kb downstream 9989 true chr6: 33527353-33537341 Medicago truncatula
Medtr6g087000 1.0kb downstream 1.0kb downstream 1000 false chr6: 33527353-33528352 Medicago truncatula
Medtr6g087000 2.0kb upstream 2.0kb upstream 10989 true chr6: 33528353-33539341 Medicago truncatula
Medtr6g087000 2.0kb upstream 2.0kb upstream 2000 false chr6: 33537342-33539341 Medicago truncatula
Medtr6g087000 2.0kb downstream 2.0kb downstream 10989 true chr6: 33526353-33537341 Medicago truncatula
Medtr6g087000 2.0kb downstream 2.0kb downstream 2000 false chr6: 33526353-33528352 Medicago truncatula
Medtr6g087000 5.0kb upstream 5.0kb upstream 13989 true chr6: 33528353-33542341 Medicago truncatula
Medtr6g087000 5.0kb upstream 5.0kb upstream 5000 false chr6: 33537342-33542341 Medicago truncatula
Medtr6g087000 5.0kb downstream 5.0kb downstream 13989 true chr6: 33523353-33537341 Medicago truncatula
Medtr6g087000 5.0kb downstream 5.0kb downstream 5000 false chr6: 33523353-33528352 Medicago truncatula
Medtr6g087000 10.0kb upstream 10.0kb upstream 18989 true chr6: 33528353-33547341 Medicago truncatula
Medtr6g087000 10.0kb upstream 10.0kb upstream 10000 false chr6: 33537342-33547341 Medicago truncatula
Medtr6g087000 10.0kb downstream 10.0kb downstream 18989 true chr6: 33518353-33537341 Medicago truncatula
Medtr6g087000 10.0kb downstream 10.0kb downstream 10000 false chr6: 33518353-33528352 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040865 5273 Angiosperm View MSA
122305651 5265 Fabidae View MSA
124063756 5270 Rosid View MSA
123738475 5271 Pentapetalae View MSA
122789180 5272 Eudicot View MSA
121348161 5274 Embryophyte View MSA
123427796 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.695        
cufflinks 6.384        
cufflinks 6.276        
cufflinks 0.345       Low
cufflinks 6.677       High
cufflinks 0.539        
cufflinks 0.843        
cufflinks 6.146        
cufflinks 0.498       Low

0 Strain