Gene : Medtr3g111190 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13812//PTHR13812:SF20 - ORNITHINE CYCLODEAMINASE-RELATED Description:  glutamyl-tRNA reductase family protein
Genomic Order:  6282 Name:  ? Medtr3g111190
Secondary Identifier:  ? PAC:31060645
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5188 Medicago truncatula pathologic  
Mtruncatula PWY-5918 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g111190 0.5kb upstream 0.5kb upstream 3343 true chr3: 51955556-51958898 Medicago truncatula
Medtr3g111190 0.5kb upstream 0.5kb upstream 500 false chr3: 51955556-51956055 Medicago truncatula
Medtr3g111190 0.5kb downstream 0.5kb downstream 3343 true chr3: 51956056-51959398 Medicago truncatula
Medtr3g111190 0.5kb downstream 0.5kb downstream 500 false chr3: 51958899-51959398 Medicago truncatula
Medtr3g111190 1.0kb upstream 1.0kb upstream 3843 true chr3: 51955056-51958898 Medicago truncatula
Medtr3g111190 1.0kb upstream 1.0kb upstream 1000 false chr3: 51955056-51956055 Medicago truncatula
Medtr3g111190 1.0kb downstream 1.0kb downstream 3843 true chr3: 51956056-51959898 Medicago truncatula
Medtr3g111190 1.0kb downstream 1.0kb downstream 1000 false chr3: 51958899-51959898 Medicago truncatula
Medtr3g111190 2.0kb upstream 2.0kb upstream 4843 true chr3: 51954056-51958898 Medicago truncatula
Medtr3g111190 2.0kb upstream 2.0kb upstream 2000 false chr3: 51954056-51956055 Medicago truncatula
Medtr3g111190 2.0kb downstream 2.0kb downstream 4843 true chr3: 51956056-51960898 Medicago truncatula
Medtr3g111190 2.0kb downstream 2.0kb downstream 2000 false chr3: 51958899-51960898 Medicago truncatula
Medtr3g111190 5.0kb upstream 5.0kb upstream 7843 true chr3: 51951056-51958898 Medicago truncatula
Medtr3g111190 5.0kb upstream 5.0kb upstream 5000 false chr3: 51951056-51956055 Medicago truncatula
Medtr3g111190 5.0kb downstream 5.0kb downstream 7843 true chr3: 51956056-51963898 Medicago truncatula
Medtr3g111190 5.0kb downstream 5.0kb downstream 5000 false chr3: 51958899-51963898 Medicago truncatula
Medtr3g111190 10.0kb upstream 10.0kb upstream 12843 true chr3: 51946056-51958898 Medicago truncatula
Medtr3g111190 10.0kb upstream 10.0kb upstream 10000 false chr3: 51946056-51956055 Medicago truncatula
Medtr3g111190 10.0kb downstream 10.0kb downstream 12843 true chr3: 51956056-51968898 Medicago truncatula
Medtr3g111190 10.0kb downstream 10.0kb downstream 10000 false chr3: 51958899-51968898 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308158 5265 Fabidae View MSA
124065838 5270 Rosid View MSA
123737748 5271 Pentapetalae View MSA
122790191 5272 Eudicot View MSA
122042343 5273 Angiosperm View MSA
121344593 5274 Embryophyte View MSA
123424931 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.111        
cufflinks 20.238     High  
cufflinks 16.463     High  
cufflinks 5.947        
cufflinks 26.851     High High
cufflinks 2.343       Low
cufflinks 5.504        
cufflinks 18.921     High  
cufflinks 8.744        

0 Strain