Gene : Medtr2g087820 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22763//PTHR22763:SF47 - RING ZINC FINGER PROTEIN Description:  E3 ubiquitin-protein ligase RHF2A-like protein
Genomic Order:  4651 Name:  ? Medtr2g087820
Secondary Identifier:  ? PAC:31066093
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g087820 0.5kb upstream 0.5kb upstream 4224 true chr2: 36958700-36962923 Medicago truncatula
Medtr2g087820 0.5kb upstream 0.5kb upstream 500 false chr2: 36962424-36962923 Medicago truncatula
Medtr2g087820 0.5kb downstream 0.5kb downstream 4224 true chr2: 36958200-36962423 Medicago truncatula
Medtr2g087820 0.5kb downstream 0.5kb downstream 500 false chr2: 36958200-36958699 Medicago truncatula
Medtr2g087820 1.0kb upstream 1.0kb upstream 4724 true chr2: 36958700-36963423 Medicago truncatula
Medtr2g087820 1.0kb upstream 1.0kb upstream 1000 false chr2: 36962424-36963423 Medicago truncatula
Medtr2g087820 1.0kb downstream 1.0kb downstream 4724 true chr2: 36957700-36962423 Medicago truncatula
Medtr2g087820 1.0kb downstream 1.0kb downstream 1000 false chr2: 36957700-36958699 Medicago truncatula
Medtr2g087820 2.0kb upstream 2.0kb upstream 5724 true chr2: 36958700-36964423 Medicago truncatula
Medtr2g087820 2.0kb upstream 2.0kb upstream 2000 false chr2: 36962424-36964423 Medicago truncatula
Medtr2g087820 2.0kb downstream 2.0kb downstream 5724 true chr2: 36956700-36962423 Medicago truncatula
Medtr2g087820 2.0kb downstream 2.0kb downstream 2000 false chr2: 36956700-36958699 Medicago truncatula
Medtr2g087820 5.0kb upstream 5.0kb upstream 8724 true chr2: 36958700-36967423 Medicago truncatula
Medtr2g087820 5.0kb upstream 5.0kb upstream 5000 false chr2: 36962424-36967423 Medicago truncatula
Medtr2g087820 5.0kb downstream 5.0kb downstream 8724 true chr2: 36953700-36962423 Medicago truncatula
Medtr2g087820 5.0kb downstream 5.0kb downstream 5000 false chr2: 36953700-36958699 Medicago truncatula
Medtr2g087820 10.0kb upstream 10.0kb upstream 13724 true chr2: 36958700-36972423 Medicago truncatula
Medtr2g087820 10.0kb upstream 10.0kb upstream 10000 false chr2: 36962424-36972423 Medicago truncatula
Medtr2g087820 10.0kb downstream 10.0kb downstream 13724 true chr2: 36948700-36962423 Medicago truncatula
Medtr2g087820 10.0kb downstream 10.0kb downstream 10000 false chr2: 36948700-36958699 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301139 5265 Fabidae View MSA
124072102 5270 Rosid View MSA
123744750 5271 Pentapetalae View MSA
122788933 5272 Eudicot View MSA
122041616 5273 Angiosperm View MSA
121350334 5274 Embryophyte View MSA
123381683 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.343     High High
cufflinks 6.969        
cufflinks 6.132        
cufflinks 7.471        
cufflinks 6.386        
cufflinks 5.196       Low
cufflinks 11.654     High  
cufflinks 5.314        
cufflinks 16.377     High High

0 Strain