Gene : Cucsa.289040 C. sativus v1.0
Defline:  (1 of 1) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  59
Name:  ? Cucsa.289040 Secondary Identifier:  ? PAC:16975160
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus TRNA-CHARGING-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.289040 0.5kb upstream 0.5kb upstream 3495 true scaffold02698: 554034-557528 Cucumis sativus
Cucsa.289040 0.5kb upstream 0.5kb upstream 500 false scaffold02698: 557029-557528 Cucumis sativus
Cucsa.289040 0.5kb downstream 0.5kb downstream 3495 true scaffold02698: 553534-557028 Cucumis sativus
Cucsa.289040 0.5kb downstream 0.5kb downstream 500 false scaffold02698: 553534-554033 Cucumis sativus
Cucsa.289040 1.0kb upstream 1.0kb upstream 3995 true scaffold02698: 554034-558028 Cucumis sativus
Cucsa.289040 1.0kb upstream 1.0kb upstream 1000 false scaffold02698: 557029-558028 Cucumis sativus
Cucsa.289040 1.0kb downstream 1.0kb downstream 3995 true scaffold02698: 553034-557028 Cucumis sativus
Cucsa.289040 1.0kb downstream 1.0kb downstream 1000 false scaffold02698: 553034-554033 Cucumis sativus
Cucsa.289040 2.0kb upstream 2.0kb upstream 4995 true scaffold02698: 554034-559028 Cucumis sativus
Cucsa.289040 2.0kb upstream 2.0kb upstream 2000 false scaffold02698: 557029-559028 Cucumis sativus
Cucsa.289040 2.0kb downstream 2.0kb downstream 4995 true scaffold02698: 552034-557028 Cucumis sativus
Cucsa.289040 2.0kb downstream 2.0kb downstream 2000 false scaffold02698: 552034-554033 Cucumis sativus
Cucsa.289040 5.0kb upstream 5.0kb upstream 7995 true scaffold02698: 554034-562028 Cucumis sativus
Cucsa.289040 5.0kb upstream 5.0kb upstream 5000 false scaffold02698: 557029-562028 Cucumis sativus
Cucsa.289040 5.0kb downstream 5.0kb downstream 7995 true scaffold02698: 549034-557028 Cucumis sativus
Cucsa.289040 5.0kb downstream 5.0kb downstream 5000 false scaffold02698: 549034-554033 Cucumis sativus
Cucsa.289040 10.0kb upstream 10.0kb upstream 12995 true scaffold02698: 554034-567028 Cucumis sativus
Cucsa.289040 10.0kb upstream 10.0kb upstream 10000 false scaffold02698: 557029-567028 Cucumis sativus
Cucsa.289040 10.0kb downstream 10.0kb downstream 12995 true scaffold02698: 544034-557028 Cucumis sativus
Cucsa.289040 10.0kb downstream 10.0kb downstream 10000 false scaffold02698: 544034-554033 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307206 5265 Fabidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain