Gene : Cucsa.192410 C. sativus v1.0
Defline:  (1 of 2) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  34
Name:  ? Cucsa.192410 Secondary Identifier:  ? PAC:16967976
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus TRNA-CHARGING-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.192410 0.5kb upstream 0.5kb upstream 12425 true scaffold01333: 263343-275767 Cucumis sativus
Cucsa.192410 0.5kb upstream 0.5kb upstream 500 false scaffold01333: 275268-275767 Cucumis sativus
Cucsa.192410 0.5kb downstream 0.5kb downstream 12425 true scaffold01333: 262843-275267 Cucumis sativus
Cucsa.192410 0.5kb downstream 0.5kb downstream 500 false scaffold01333: 262843-263342 Cucumis sativus
Cucsa.192410 1.0kb upstream 1.0kb upstream 12925 true scaffold01333: 263343-276267 Cucumis sativus
Cucsa.192410 1.0kb upstream 1.0kb upstream 1000 false scaffold01333: 275268-276267 Cucumis sativus
Cucsa.192410 1.0kb downstream 1.0kb downstream 12925 true scaffold01333: 262343-275267 Cucumis sativus
Cucsa.192410 1.0kb downstream 1.0kb downstream 1000 false scaffold01333: 262343-263342 Cucumis sativus
Cucsa.192410 2.0kb upstream 2.0kb upstream 13925 true scaffold01333: 263343-277267 Cucumis sativus
Cucsa.192410 2.0kb upstream 2.0kb upstream 2000 false scaffold01333: 275268-277267 Cucumis sativus
Cucsa.192410 2.0kb downstream 2.0kb downstream 13925 true scaffold01333: 261343-275267 Cucumis sativus
Cucsa.192410 2.0kb downstream 2.0kb downstream 2000 false scaffold01333: 261343-263342 Cucumis sativus
Cucsa.192410 5.0kb upstream 5.0kb upstream 16925 true scaffold01333: 263343-280267 Cucumis sativus
Cucsa.192410 5.0kb upstream 5.0kb upstream 5000 false scaffold01333: 275268-280267 Cucumis sativus
Cucsa.192410 5.0kb downstream 5.0kb downstream 16925 true scaffold01333: 258343-275267 Cucumis sativus
Cucsa.192410 5.0kb downstream 5.0kb downstream 5000 false scaffold01333: 258343-263342 Cucumis sativus
Cucsa.192410 10.0kb upstream 10.0kb upstream 21925 true scaffold01333: 263343-285267 Cucumis sativus
Cucsa.192410 10.0kb upstream 10.0kb upstream 10000 false scaffold01333: 275268-285267 Cucumis sativus
Cucsa.192410 10.0kb downstream 10.0kb downstream 21925 true scaffold01333: 253343-275267 Cucumis sativus
Cucsa.192410 10.0kb downstream 10.0kb downstream 10000 false scaffold01333: 253343-263342 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307158 5265 Fabidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain