Gene : VSP6 C. reinhardtii v5.6
Primary Identifier:  ? Cre09.g392319 Defline:  (1 of 7) PTHR11339//PTHR11339:SF290 - EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED // PROTEIN T26A8.1
Genomic Order:  619 Name:  ? Cre09.g392319
Secondary Identifier:  ? PAC:30781129
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre09.g392319 0.5kb upstream 0.5kb upstream 6647 true chromosome_9: 3926496-3933142 Chlamydomonas reinhardtii
Cre09.g392319 0.5kb upstream 0.5kb upstream 500 false chromosome_9: 3926496-3926995 Chlamydomonas reinhardtii
Cre09.g392319 0.5kb downstream 0.5kb downstream 6647 true chromosome_9: 3926996-3933642 Chlamydomonas reinhardtii
Cre09.g392319 0.5kb downstream 0.5kb downstream 500 false chromosome_9: 3933143-3933642 Chlamydomonas reinhardtii
Cre09.g392319 1.0kb upstream 1.0kb upstream 7147 true chromosome_9: 3925996-3933142 Chlamydomonas reinhardtii
Cre09.g392319 1.0kb upstream 1.0kb upstream 1000 false chromosome_9: 3925996-3926995 Chlamydomonas reinhardtii
Cre09.g392319 1.0kb downstream 1.0kb downstream 7147 true chromosome_9: 3926996-3934142 Chlamydomonas reinhardtii
Cre09.g392319 1.0kb downstream 1.0kb downstream 1000 false chromosome_9: 3933143-3934142 Chlamydomonas reinhardtii
Cre09.g392319 2.0kb upstream 2.0kb upstream 8147 true chromosome_9: 3924996-3933142 Chlamydomonas reinhardtii
Cre09.g392319 2.0kb upstream 2.0kb upstream 2000 false chromosome_9: 3924996-3926995 Chlamydomonas reinhardtii
Cre09.g392319 2.0kb downstream 2.0kb downstream 8147 true chromosome_9: 3926996-3935142 Chlamydomonas reinhardtii
Cre09.g392319 2.0kb downstream 2.0kb downstream 2000 false chromosome_9: 3933143-3935142 Chlamydomonas reinhardtii
Cre09.g392319 5.0kb upstream 5.0kb upstream 11147 true chromosome_9: 3921996-3933142 Chlamydomonas reinhardtii
Cre09.g392319 5.0kb upstream 5.0kb upstream 5000 false chromosome_9: 3921996-3926995 Chlamydomonas reinhardtii
Cre09.g392319 5.0kb downstream 5.0kb downstream 11147 true chromosome_9: 3926996-3938142 Chlamydomonas reinhardtii
Cre09.g392319 5.0kb downstream 5.0kb downstream 5000 false chromosome_9: 3933143-3938142 Chlamydomonas reinhardtii
Cre09.g392319 10.0kb upstream 10.0kb upstream 16147 true chromosome_9: 3916996-3933142 Chlamydomonas reinhardtii
Cre09.g392319 10.0kb upstream 10.0kb upstream 10000 false chromosome_9: 3916996-3926995 Chlamydomonas reinhardtii
Cre09.g392319 10.0kb downstream 10.0kb downstream 16147 true chromosome_9: 3926996-3943142 Chlamydomonas reinhardtii
Cre09.g392319 10.0kb downstream 10.0kb downstream 10000 false chromosome_9: 3933143-3943142 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124081432 5260 Chlorophyte View MSA
123399162 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.005        
cufflinks 11.702        
cufflinks 34.511     High High
cufflinks 50.727     High High
cufflinks 10.677        
cufflinks 16.032     High  
cufflinks 5.873        
cufflinks 24.535     High  
cufflinks 9.58        
cufflinks 2.323       Low
cufflinks 81.482     High High
cufflinks 23.852     High  
cufflinks 6.184        
cufflinks 16.838     High  
cufflinks 18.691     High  
cufflinks 14.498     High  
cufflinks 18.003     High  
cufflinks 23.533     High  
cufflinks 1.497       Low
cufflinks 9.554        
cufflinks 19.948     High  
cufflinks 14.977     High  
cufflinks 7.165        
cufflinks 33.845     High High
cufflinks 16.293     High  
cufflinks 61.2639 0.0 125.717 High High
cufflinks 63.7982 11.4727 116.124 High  
cufflinks 137.161 0.0 289.938 High  
cufflinks 77.1796 0.0 158.12 High  
cufflinks 74.0518 1.08026 147.023 High Low

0 Strain