Gene : MCA1 C. reinhardtii v5.6
Primary Identifier:  ? Cre08.g358250 Defline:  (1 of 2) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3)
Genomic Order:  5 Name:  ? Cre08.g358250
Secondary Identifier:  ? PAC:30773680
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre08.g358250 0.5kb upstream 0.5kb upstream 5780 true chromosome_8: 16076-21855 Chlamydomonas reinhardtii
Cre08.g358250 0.5kb upstream 0.5kb upstream 500 false chromosome_8: 16076-16575 Chlamydomonas reinhardtii
Cre08.g358250 0.5kb downstream 0.5kb downstream 5780 true chromosome_8: 16576-22355 Chlamydomonas reinhardtii
Cre08.g358250 0.5kb downstream 0.5kb downstream 500 false chromosome_8: 21856-22355 Chlamydomonas reinhardtii
Cre08.g358250 1.0kb upstream 1.0kb upstream 6280 true chromosome_8: 15576-21855 Chlamydomonas reinhardtii
Cre08.g358250 1.0kb upstream 1.0kb upstream 1000 false chromosome_8: 15576-16575 Chlamydomonas reinhardtii
Cre08.g358250 1.0kb downstream 1.0kb downstream 6280 true chromosome_8: 16576-22855 Chlamydomonas reinhardtii
Cre08.g358250 1.0kb downstream 1.0kb downstream 1000 false chromosome_8: 21856-22855 Chlamydomonas reinhardtii
Cre08.g358250 2.0kb upstream 2.0kb upstream 7280 true chromosome_8: 14576-21855 Chlamydomonas reinhardtii
Cre08.g358250 2.0kb upstream 2.0kb upstream 2000 false chromosome_8: 14576-16575 Chlamydomonas reinhardtii
Cre08.g358250 2.0kb downstream 2.0kb downstream 7280 true chromosome_8: 16576-23855 Chlamydomonas reinhardtii
Cre08.g358250 2.0kb downstream 2.0kb downstream 2000 false chromosome_8: 21856-23855 Chlamydomonas reinhardtii
Cre08.g358250 5.0kb upstream 5.0kb upstream 10280 true chromosome_8: 11576-21855 Chlamydomonas reinhardtii
Cre08.g358250 5.0kb upstream 5.0kb upstream 5000 false chromosome_8: 11576-16575 Chlamydomonas reinhardtii
Cre08.g358250 5.0kb downstream 5.0kb downstream 10280 true chromosome_8: 16576-26855 Chlamydomonas reinhardtii
Cre08.g358250 5.0kb downstream 5.0kb downstream 5000 false chromosome_8: 21856-26855 Chlamydomonas reinhardtii
Cre08.g358250 10.0kb upstream 10.0kb upstream 15280 true chromosome_8: 6576-21855 Chlamydomonas reinhardtii
Cre08.g358250 10.0kb upstream 10.0kb upstream 10000 false chromosome_8: 6576-16575 Chlamydomonas reinhardtii
Cre08.g358250 10.0kb downstream 10.0kb downstream 15280 true chromosome_8: 16576-31855 Chlamydomonas reinhardtii
Cre08.g358250 10.0kb downstream 10.0kb downstream 10000 false chromosome_8: 21856-31855 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113471 5260 Chlorophyte View MSA
123429046 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.366       Low
cufflinks 10.836       High
cufflinks 5.36        
cufflinks 6.604        
cufflinks 11.288       High
cufflinks 8.178        
cufflinks 11.828       High
cufflinks 11.686       High
cufflinks 4.336       Low
cufflinks 3.578       Low
cufflinks 2.683       Low
cufflinks 9.615        
cufflinks 6.981        
cufflinks 8.6        
cufflinks 6.855        
cufflinks 6.538        
cufflinks 4.614       Low
cufflinks 9.626        
cufflinks 5.169     High  
cufflinks 9.802        
cufflinks 7.553        
cufflinks 5.316        
cufflinks 8.847        
cufflinks 10.63       High
cufflinks 5.306        
cufflinks 121.341 0.0 247.221 High  
cufflinks 24.5572 6.15591 42.9584    
cufflinks 11.1951 0.0 22.5086   Low
cufflinks 17.7876 0.668051 34.9071    
cufflinks 18.2213 2.78731 33.6553    

0 Strain