Gene : SHMT2 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g293950 Defline:  (1 of 3) 2.1.2.1 - Glycine hydroxymethyltransferase / Threonine aldolase
Genomic Order:  1192 Name:  ? Cre06.g293950
Secondary Identifier:  ? PAC:30778403
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii GLYSYN-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-2161 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-3841 Chlamydomonas reinhardtii pathologic  
Creinhardtii SER-GLYSYN-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g293950 0.5kb upstream 0.5kb upstream 4624 true chromosome_6: 6636179-6640802 Chlamydomonas reinhardtii
Cre06.g293950 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 6636179-6636678 Chlamydomonas reinhardtii
Cre06.g293950 0.5kb downstream 0.5kb downstream 4624 true chromosome_6: 6636679-6641302 Chlamydomonas reinhardtii
Cre06.g293950 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 6640803-6641302 Chlamydomonas reinhardtii
Cre06.g293950 1.0kb upstream 1.0kb upstream 5124 true chromosome_6: 6635679-6640802 Chlamydomonas reinhardtii
Cre06.g293950 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 6635679-6636678 Chlamydomonas reinhardtii
Cre06.g293950 1.0kb downstream 1.0kb downstream 5124 true chromosome_6: 6636679-6641802 Chlamydomonas reinhardtii
Cre06.g293950 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 6640803-6641802 Chlamydomonas reinhardtii
Cre06.g293950 2.0kb upstream 2.0kb upstream 6124 true chromosome_6: 6634679-6640802 Chlamydomonas reinhardtii
Cre06.g293950 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 6634679-6636678 Chlamydomonas reinhardtii
Cre06.g293950 2.0kb downstream 2.0kb downstream 6124 true chromosome_6: 6636679-6642802 Chlamydomonas reinhardtii
Cre06.g293950 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 6640803-6642802 Chlamydomonas reinhardtii
Cre06.g293950 5.0kb upstream 5.0kb upstream 9124 true chromosome_6: 6631679-6640802 Chlamydomonas reinhardtii
Cre06.g293950 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 6631679-6636678 Chlamydomonas reinhardtii
Cre06.g293950 5.0kb downstream 5.0kb downstream 9124 true chromosome_6: 6636679-6645802 Chlamydomonas reinhardtii
Cre06.g293950 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 6640803-6645802 Chlamydomonas reinhardtii
Cre06.g293950 10.0kb upstream 10.0kb upstream 14124 true chromosome_6: 6626679-6640802 Chlamydomonas reinhardtii
Cre06.g293950 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 6626679-6636678 Chlamydomonas reinhardtii
Cre06.g293950 10.0kb downstream 10.0kb downstream 14124 true chromosome_6: 6636679-6650802 Chlamydomonas reinhardtii
Cre06.g293950 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 6640803-6650802 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110418 5260 Chlorophyte View MSA
123426459 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 122.966     High  
cufflinks 89.421     High  
cufflinks 116.768     High  
cufflinks 62.279     High  
cufflinks 82.922     High  
cufflinks 104.686     High  
cufflinks 94.092     High  
cufflinks 78.707     High  
cufflinks 88.071     High  
cufflinks 10.076     High Low
cufflinks 83.722     High  
cufflinks 79.326     High  
cufflinks 52.172     High  
cufflinks 79.18     High  
cufflinks 52.521     High  
cufflinks 143.932     High High
cufflinks 10.303       Low
cufflinks 63.844     High  
cufflinks 2.952       Low
cufflinks 22.056     High  
cufflinks 46.403     High  
cufflinks 24.425     High  
cufflinks 59.875     High  
cufflinks 125.443     High  
cufflinks 11.881     High Low
cufflinks 919.812 184.9 1654.72 High Low
cufflinks 161.636 22.984 300.288 High  
cufflinks 31.3633 0.0 64.2482 High Low
cufflinks 144.144 0.0 293.734 High Low
cufflinks 239.833 1.7433 477.922 High High

0 Strain