Gene : LHCBM8 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g284250 Defline:  (1 of 6) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1)
Genomic Order:  996 Name:  ? Cre06.g284250
Secondary Identifier:  ? PAC:30779962
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PHOTOALL-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-101 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7731 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g284250 0.5kb upstream 0.5kb upstream 4653 true chromosome_6: 5433613-5438265 Chlamydomonas reinhardtii
Cre06.g284250 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 5437766-5438265 Chlamydomonas reinhardtii
Cre06.g284250 0.5kb downstream 0.5kb downstream 4653 true chromosome_6: 5433113-5437765 Chlamydomonas reinhardtii
Cre06.g284250 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 5433113-5433612 Chlamydomonas reinhardtii
Cre06.g284250 1.0kb upstream 1.0kb upstream 5153 true chromosome_6: 5433613-5438765 Chlamydomonas reinhardtii
Cre06.g284250 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 5437766-5438765 Chlamydomonas reinhardtii
Cre06.g284250 1.0kb downstream 1.0kb downstream 5153 true chromosome_6: 5432613-5437765 Chlamydomonas reinhardtii
Cre06.g284250 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 5432613-5433612 Chlamydomonas reinhardtii
Cre06.g284250 2.0kb upstream 2.0kb upstream 6153 true chromosome_6: 5433613-5439765 Chlamydomonas reinhardtii
Cre06.g284250 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 5437766-5439765 Chlamydomonas reinhardtii
Cre06.g284250 2.0kb downstream 2.0kb downstream 6153 true chromosome_6: 5431613-5437765 Chlamydomonas reinhardtii
Cre06.g284250 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 5431613-5433612 Chlamydomonas reinhardtii
Cre06.g284250 5.0kb upstream 5.0kb upstream 9153 true chromosome_6: 5433613-5442765 Chlamydomonas reinhardtii
Cre06.g284250 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 5437766-5442765 Chlamydomonas reinhardtii
Cre06.g284250 5.0kb downstream 5.0kb downstream 9153 true chromosome_6: 5428613-5437765 Chlamydomonas reinhardtii
Cre06.g284250 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 5428613-5433612 Chlamydomonas reinhardtii
Cre06.g284250 10.0kb upstream 10.0kb upstream 14153 true chromosome_6: 5433613-5447765 Chlamydomonas reinhardtii
Cre06.g284250 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 5437766-5447765 Chlamydomonas reinhardtii
Cre06.g284250 10.0kb downstream 10.0kb downstream 14153 true chromosome_6: 5423613-5437765 Chlamydomonas reinhardtii
Cre06.g284250 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 5423613-5433612 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113612 5260 Chlorophyte View MSA
123426313 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 172.491     High  
cufflinks 96.468     High  
cufflinks 43.503     High  
cufflinks 42.299     High  
cufflinks 118.553     High  
cufflinks 103.648     High  
cufflinks 29.788     High  
cufflinks 62.783     High  
cufflinks 250.767     High High
cufflinks 55.833     High  
cufflinks 6.74       Low
cufflinks 79.161     High  
cufflinks 36.406     High  
cufflinks 83.528     High  
cufflinks 61.591     High  
cufflinks 189.118     High High
cufflinks 138.859     High  
cufflinks 80.993     High  
cufflinks 6.084     High Low
cufflinks 1.952       Low
cufflinks 72.57     High  
cufflinks 173.865     High  
cufflinks 6.834       Low
cufflinks 9.926       Low
cufflinks 223.489     High High
cufflinks 61.0761 0.0 124.654 High Low
cufflinks 107.848 18.5765 197.119 High  
cufflinks 142.117 0.0 299.181 High  
cufflinks 68.9376 0.0 141.064 High  
cufflinks 75.2161 2.75161 147.681 High  

0 Strain