Gene : LHCBM4 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g283950 Defline:  (1 of 6) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1)
Genomic Order:  989 Name:  ? Cre06.g283950
Secondary Identifier:  ? PAC:30779716
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PHOTOALL-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-101 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7731 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g283950 0.5kb upstream 0.5kb upstream 2195 true chromosome_6: 5405436-5407630 Chlamydomonas reinhardtii
Cre06.g283950 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 5405436-5405935 Chlamydomonas reinhardtii
Cre06.g283950 0.5kb downstream 0.5kb downstream 2195 true chromosome_6: 5405936-5408130 Chlamydomonas reinhardtii
Cre06.g283950 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 5407631-5408130 Chlamydomonas reinhardtii
Cre06.g283950 1.0kb upstream 1.0kb upstream 2695 true chromosome_6: 5404936-5407630 Chlamydomonas reinhardtii
Cre06.g283950 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 5404936-5405935 Chlamydomonas reinhardtii
Cre06.g283950 1.0kb downstream 1.0kb downstream 2695 true chromosome_6: 5405936-5408630 Chlamydomonas reinhardtii
Cre06.g283950 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 5407631-5408630 Chlamydomonas reinhardtii
Cre06.g283950 2.0kb upstream 2.0kb upstream 3695 true chromosome_6: 5403936-5407630 Chlamydomonas reinhardtii
Cre06.g283950 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 5403936-5405935 Chlamydomonas reinhardtii
Cre06.g283950 2.0kb downstream 2.0kb downstream 3695 true chromosome_6: 5405936-5409630 Chlamydomonas reinhardtii
Cre06.g283950 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 5407631-5409630 Chlamydomonas reinhardtii
Cre06.g283950 5.0kb upstream 5.0kb upstream 6695 true chromosome_6: 5400936-5407630 Chlamydomonas reinhardtii
Cre06.g283950 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 5400936-5405935 Chlamydomonas reinhardtii
Cre06.g283950 5.0kb downstream 5.0kb downstream 6695 true chromosome_6: 5405936-5412630 Chlamydomonas reinhardtii
Cre06.g283950 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 5407631-5412630 Chlamydomonas reinhardtii
Cre06.g283950 10.0kb upstream 10.0kb upstream 11695 true chromosome_6: 5395936-5407630 Chlamydomonas reinhardtii
Cre06.g283950 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 5395936-5405935 Chlamydomonas reinhardtii
Cre06.g283950 10.0kb downstream 10.0kb downstream 11695 true chromosome_6: 5405936-5417630 Chlamydomonas reinhardtii
Cre06.g283950 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 5407631-5417630 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113612 5260 Chlorophyte View MSA
123426313 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1313.02     High  
cufflinks 987.329     High  
cufflinks 585.975     High  
cufflinks 624.205     High  
cufflinks 1107.74     High  
cufflinks 1125.2     High  
cufflinks 381.38     High  
cufflinks 917.065     High  
cufflinks 1552.73     High  
cufflinks 624.51     High  
cufflinks 48.829     High Low
cufflinks 1017.43     High  
cufflinks 471.28     High  
cufflinks 846.798     High  
cufflinks 828.7     High  
cufflinks 1319.93     High  
cufflinks 1040.87     High  
cufflinks 909.211     High  
cufflinks 44.212     High Low
cufflinks 12.841       Low
cufflinks 939.105     High  
cufflinks 1373.55     High  
cufflinks 49.035     High Low
cufflinks 101.47     High Low
cufflinks 1384.94     High  
cufflinks 199.021 0.0 408.084 High  
cufflinks 1606.51 147.21 3065.8 High  
cufflinks 1644.76 0.0 3511.09 High  
cufflinks 136.4 0.0 277.931 High  
cufflinks 1040.84 17.4083 2064.27 High  

0 Strain