Gene : Cre06.g264250 C. reinhardtii v5.6
Defline:  (1 of 3) 5.5.1.19 - Lycopene beta-cyclase Genomic Order:  358
Name:  ? Cre06.g264250 Secondary Identifier:  ? PAC:30779291
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii CAROTENOID-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5943 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5947 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g264250 0.5kb upstream 0.5kb upstream 6995 true chromosome_6: 2014441-2021435 Chlamydomonas reinhardtii
Cre06.g264250 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 2020936-2021435 Chlamydomonas reinhardtii
Cre06.g264250 0.5kb downstream 0.5kb downstream 6995 true chromosome_6: 2013941-2020935 Chlamydomonas reinhardtii
Cre06.g264250 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 2013941-2014440 Chlamydomonas reinhardtii
Cre06.g264250 1.0kb upstream 1.0kb upstream 7495 true chromosome_6: 2014441-2021935 Chlamydomonas reinhardtii
Cre06.g264250 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 2020936-2021935 Chlamydomonas reinhardtii
Cre06.g264250 1.0kb downstream 1.0kb downstream 7495 true chromosome_6: 2013441-2020935 Chlamydomonas reinhardtii
Cre06.g264250 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 2013441-2014440 Chlamydomonas reinhardtii
Cre06.g264250 2.0kb upstream 2.0kb upstream 8495 true chromosome_6: 2014441-2022935 Chlamydomonas reinhardtii
Cre06.g264250 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 2020936-2022935 Chlamydomonas reinhardtii
Cre06.g264250 2.0kb downstream 2.0kb downstream 8495 true chromosome_6: 2012441-2020935 Chlamydomonas reinhardtii
Cre06.g264250 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 2012441-2014440 Chlamydomonas reinhardtii
Cre06.g264250 5.0kb upstream 5.0kb upstream 11495 true chromosome_6: 2014441-2025935 Chlamydomonas reinhardtii
Cre06.g264250 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 2020936-2025935 Chlamydomonas reinhardtii
Cre06.g264250 5.0kb downstream 5.0kb downstream 11495 true chromosome_6: 2009441-2020935 Chlamydomonas reinhardtii
Cre06.g264250 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 2009441-2014440 Chlamydomonas reinhardtii
Cre06.g264250 10.0kb upstream 10.0kb upstream 16495 true chromosome_6: 2014441-2030935 Chlamydomonas reinhardtii
Cre06.g264250 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 2020936-2030935 Chlamydomonas reinhardtii
Cre06.g264250 10.0kb downstream 10.0kb downstream 16495 true chromosome_6: 2004441-2020935 Chlamydomonas reinhardtii
Cre06.g264250 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 2004441-2014440 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108524 5260 Chlorophyte View MSA
123425500 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.261        
cufflinks 0.48        
cufflinks 0.322        
cufflinks 0.846        
cufflinks 0.613        
cufflinks 0.317        
cufflinks 0.56        
cufflinks 0.586        
cufflinks 0.74        
cufflinks 0.198       Low
cufflinks 0.612        
cufflinks 0.766        
cufflinks 0.984        
cufflinks 0.678        
cufflinks 0.411        
cufflinks 0.935        
cufflinks 1.19        
cufflinks 0.706        
cufflinks 0.019     Low Low
cufflinks 1.488       High
cufflinks 0.398        
cufflinks 0.806        
cufflinks 0.752        
cufflinks 1.174        
cufflinks 0.958        
cufflinks 0.48355 0.0 1.02588   Low
cufflinks 2.37825 0.03025 4.72624    
cufflinks 2.08601 0.0 4.74909    
cufflinks 0.526688 0.0 1.11117    
cufflinks 3.08304 0.339631 5.82644   High

0 Strain