Gene : SPS1 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g251500 Defline:  (1 of 1) K18787 - thermospermine synthase (ACL5)
Genomic Order:  60 Name:  ? Cre06.g251500
Secondary Identifier:  ? PAC:30778601
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii BSUBPOLYAMSYN-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii POLYAMINSYN3-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g251500 0.5kb upstream 0.5kb upstream 4382 true chromosome_6: 344045-348426 Chlamydomonas reinhardtii
Cre06.g251500 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 344045-344544 Chlamydomonas reinhardtii
Cre06.g251500 0.5kb downstream 0.5kb downstream 4382 true chromosome_6: 344545-348926 Chlamydomonas reinhardtii
Cre06.g251500 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 348427-348926 Chlamydomonas reinhardtii
Cre06.g251500 1.0kb upstream 1.0kb upstream 4882 true chromosome_6: 343545-348426 Chlamydomonas reinhardtii
Cre06.g251500 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 343545-344544 Chlamydomonas reinhardtii
Cre06.g251500 1.0kb downstream 1.0kb downstream 4882 true chromosome_6: 344545-349426 Chlamydomonas reinhardtii
Cre06.g251500 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 348427-349426 Chlamydomonas reinhardtii
Cre06.g251500 2.0kb upstream 2.0kb upstream 5882 true chromosome_6: 342545-348426 Chlamydomonas reinhardtii
Cre06.g251500 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 342545-344544 Chlamydomonas reinhardtii
Cre06.g251500 2.0kb downstream 2.0kb downstream 5882 true chromosome_6: 344545-350426 Chlamydomonas reinhardtii
Cre06.g251500 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 348427-350426 Chlamydomonas reinhardtii
Cre06.g251500 5.0kb upstream 5.0kb upstream 8882 true chromosome_6: 339545-348426 Chlamydomonas reinhardtii
Cre06.g251500 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 339545-344544 Chlamydomonas reinhardtii
Cre06.g251500 5.0kb downstream 5.0kb downstream 8882 true chromosome_6: 344545-353426 Chlamydomonas reinhardtii
Cre06.g251500 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 348427-353426 Chlamydomonas reinhardtii
Cre06.g251500 10.0kb upstream 10.0kb upstream 13882 true chromosome_6: 334545-348426 Chlamydomonas reinhardtii
Cre06.g251500 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 334545-344544 Chlamydomonas reinhardtii
Cre06.g251500 10.0kb downstream 10.0kb downstream 13882 true chromosome_6: 344545-358426 Chlamydomonas reinhardtii
Cre06.g251500 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 348427-358426 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108390 5260 Chlorophyte View MSA
123426712 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.07     High High
cufflinks 16.646     High High
cufflinks 7.501        
cufflinks 10.642        
cufflinks 13.909     High  
cufflinks 12.798     High  
cufflinks 8.629        
cufflinks 9.711        
cufflinks 16.277     High High
cufflinks 4.425       Low
cufflinks 10.283        
cufflinks 12.089        
cufflinks 4.968        
cufflinks 13.84     High  
cufflinks 9.211        
cufflinks 25.46     High High
cufflinks 2.478       Low
cufflinks 8.59        
cufflinks 2.326       Low
cufflinks 5.59        
cufflinks 9.65        
cufflinks 5.121        
cufflinks 9.221        
cufflinks 8.449        
cufflinks 2.433       Low
cufflinks 90.2075 0.0 183.825 High High
cufflinks 62.404 14.0292 110.779 High  
cufflinks 0.601353 0.0 1.70365   Low
cufflinks 28.301 1.75472 54.8472 High Low
cufflinks 22.3266 3.97476 40.6784    

0 Strain