Gene : TSG1 C. reinhardtii v5.6
Primary Identifier:  ? Cre05.g233800 Defline:  (1 of 1) K01880 - glycyl-tRNA synthetase (GARS, glyS1)
Genomic Order:  19 Name:  ? Cre05.g233800
Secondary Identifier:  ? PAC:30783061
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre05.g233800 0.5kb upstream 0.5kb upstream 9242 true chromosome_5: 224719-233960 Chlamydomonas reinhardtii
Cre05.g233800 0.5kb upstream 0.5kb upstream 500 false chromosome_5: 224719-225218 Chlamydomonas reinhardtii
Cre05.g233800 0.5kb downstream 0.5kb downstream 9242 true chromosome_5: 225219-234460 Chlamydomonas reinhardtii
Cre05.g233800 0.5kb downstream 0.5kb downstream 500 false chromosome_5: 233961-234460 Chlamydomonas reinhardtii
Cre05.g233800 1.0kb upstream 1.0kb upstream 9742 true chromosome_5: 224219-233960 Chlamydomonas reinhardtii
Cre05.g233800 1.0kb upstream 1.0kb upstream 1000 false chromosome_5: 224219-225218 Chlamydomonas reinhardtii
Cre05.g233800 1.0kb downstream 1.0kb downstream 9742 true chromosome_5: 225219-234960 Chlamydomonas reinhardtii
Cre05.g233800 1.0kb downstream 1.0kb downstream 1000 false chromosome_5: 233961-234960 Chlamydomonas reinhardtii
Cre05.g233800 2.0kb upstream 2.0kb upstream 10742 true chromosome_5: 223219-233960 Chlamydomonas reinhardtii
Cre05.g233800 2.0kb upstream 2.0kb upstream 2000 false chromosome_5: 223219-225218 Chlamydomonas reinhardtii
Cre05.g233800 2.0kb downstream 2.0kb downstream 10742 true chromosome_5: 225219-235960 Chlamydomonas reinhardtii
Cre05.g233800 2.0kb downstream 2.0kb downstream 2000 false chromosome_5: 233961-235960 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb upstream 5.0kb upstream 13742 true chromosome_5: 220219-233960 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb upstream 5.0kb upstream 5000 false chromosome_5: 220219-225218 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb downstream 5.0kb downstream 13742 true chromosome_5: 225219-238960 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb downstream 5.0kb downstream 5000 false chromosome_5: 233961-238960 Chlamydomonas reinhardtii
Cre05.g233800 10.0kb upstream 10.0kb upstream 18742 true chromosome_5: 215219-233960 Chlamydomonas reinhardtii
Cre05.g233800 10.0kb upstream 10.0kb upstream 10000 false chromosome_5: 215219-225218 Chlamydomonas reinhardtii
Cre05.g233800 10.0kb downstream 10.0kb downstream 18742 true chromosome_5: 225219-243960 Chlamydomonas reinhardtii
Cre05.g233800 10.0kb downstream 10.0kb downstream 10000 false chromosome_5: 233961-243960 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108283 5260 Chlorophyte View MSA
123423981 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.655     High  
cufflinks 29.234     High High
cufflinks 19.577     High  
cufflinks 18.975     High  
cufflinks 27.03     High High
cufflinks 22.39     High  
cufflinks 16.854     High  
cufflinks 18.946     High  
cufflinks 25.295     High  
cufflinks 7.486     High Low
cufflinks 17.421     High  
cufflinks 17.596     High  
cufflinks 9.739        
cufflinks 26.968     High High
cufflinks 13.638     High  
cufflinks 27.003     High High
cufflinks 9.336        
cufflinks 23.939     High  
cufflinks 2.517       Low
cufflinks 5.082       Low
cufflinks 17.219     High  
cufflinks 7.406       Low
cufflinks 9.873        
cufflinks 16.645     High  
cufflinks 8.146        
cufflinks 76.8925 0.0 157.617 High Low
cufflinks 91.2078 14.9245 167.491 High  
cufflinks 23.4642 0.0 47.9958   Low
cufflinks 51.582 0.0 105.704 High Low
cufflinks 85.9137 1.29422 170.533 High High

0 Strain