Gene : Cre05.g230800 C. reinhardtii v5.6
Defline:  (1 of 1) PF00176//PF07496 - SNF2 family N-terminal domain (SNF2_N) // CW-type Zinc Finger (zf-CW) Genomic Order:  72
Name:  ? Cre05.g230800 Secondary Identifier:  ? PAC:30783039
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre05.g230800 0.5kb upstream 0.5kb upstream 9746 true chromosome_5: 674129-683874 Chlamydomonas reinhardtii
Cre05.g230800 0.5kb upstream 0.5kb upstream 500 false chromosome_5: 674129-674628 Chlamydomonas reinhardtii
Cre05.g230800 0.5kb downstream 0.5kb downstream 9746 true chromosome_5: 674629-684374 Chlamydomonas reinhardtii
Cre05.g230800 0.5kb downstream 0.5kb downstream 500 false chromosome_5: 683875-684374 Chlamydomonas reinhardtii
Cre05.g230800 1.0kb upstream 1.0kb upstream 10246 true chromosome_5: 673629-683874 Chlamydomonas reinhardtii
Cre05.g230800 1.0kb upstream 1.0kb upstream 1000 false chromosome_5: 673629-674628 Chlamydomonas reinhardtii
Cre05.g230800 1.0kb downstream 1.0kb downstream 10246 true chromosome_5: 674629-684874 Chlamydomonas reinhardtii
Cre05.g230800 1.0kb downstream 1.0kb downstream 1000 false chromosome_5: 683875-684874 Chlamydomonas reinhardtii
Cre05.g230800 2.0kb upstream 2.0kb upstream 11246 true chromosome_5: 672629-683874 Chlamydomonas reinhardtii
Cre05.g230800 2.0kb upstream 2.0kb upstream 2000 false chromosome_5: 672629-674628 Chlamydomonas reinhardtii
Cre05.g230800 2.0kb downstream 2.0kb downstream 11246 true chromosome_5: 674629-685874 Chlamydomonas reinhardtii
Cre05.g230800 2.0kb downstream 2.0kb downstream 2000 false chromosome_5: 683875-685874 Chlamydomonas reinhardtii
Cre05.g230800 5.0kb upstream 5.0kb upstream 14246 true chromosome_5: 669629-683874 Chlamydomonas reinhardtii
Cre05.g230800 5.0kb upstream 5.0kb upstream 5000 false chromosome_5: 669629-674628 Chlamydomonas reinhardtii
Cre05.g230800 5.0kb downstream 5.0kb downstream 14246 true chromosome_5: 674629-688874 Chlamydomonas reinhardtii
Cre05.g230800 5.0kb downstream 5.0kb downstream 5000 false chromosome_5: 683875-688874 Chlamydomonas reinhardtii
Cre05.g230800 10.0kb upstream 10.0kb upstream 19246 true chromosome_5: 664629-683874 Chlamydomonas reinhardtii
Cre05.g230800 10.0kb upstream 10.0kb upstream 10000 false chromosome_5: 664629-674628 Chlamydomonas reinhardtii
Cre05.g230800 10.0kb downstream 10.0kb downstream 19246 true chromosome_5: 674629-693874 Chlamydomonas reinhardtii
Cre05.g230800 10.0kb downstream 10.0kb downstream 10000 false chromosome_5: 683875-693874 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124112633 5260 Chlorophyte View MSA
123424068 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.043     Low  
cufflinks 0.235        
cufflinks 0.104     Low  
cufflinks 0.203        
cufflinks 0.174        
cufflinks 0.095     Low  
cufflinks 0.164     Low  
cufflinks 0.153     Low  
cufflinks 0.049     Low  
cufflinks 0.015     Low Low
cufflinks 0.232        
cufflinks 0.248        
cufflinks 0.007     Low Low
cufflinks 0.12     Low  
cufflinks 0.207        
cufflinks 0.053     Low  
cufflinks 0.253        
cufflinks 0.167        
cufflinks 0.013     Low Low
cufflinks 0.211        
cufflinks 0.161        
cufflinks 0.101     Low  
cufflinks 0.192        
cufflinks 0.129     Low  
cufflinks 0.108     Low  
cufflinks 1.23772 0.129103 2.34633   High
cufflinks 1.26028 0.00286934 2.51769    
cufflinks 0.142783 0.0 0.449133 Low  
cufflinks 0.749174 0.0287201 1.46963    
cufflinks 0.745865 0.0 1.50733    

0 Strain