Gene : TSA1 C. reinhardtii v5.6
Primary Identifier:  ? Cre02.g143200 Defline:  (1 of 1) PTHR11777//PTHR11777:SF18 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CYTOPLASMIC
Genomic Order:  1291 Name:  ? Cre02.g143200
Secondary Identifier:  ? PAC:30784969
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre02.g143200 0.5kb upstream 0.5kb upstream 11332 true chromosome_2: 7662836-7674167 Chlamydomonas reinhardtii
Cre02.g143200 0.5kb upstream 0.5kb upstream 500 false chromosome_2: 7662836-7663335 Chlamydomonas reinhardtii
Cre02.g143200 0.5kb downstream 0.5kb downstream 11332 true chromosome_2: 7663336-7674667 Chlamydomonas reinhardtii
Cre02.g143200 0.5kb downstream 0.5kb downstream 500 false chromosome_2: 7674168-7674667 Chlamydomonas reinhardtii
Cre02.g143200 1.0kb upstream 1.0kb upstream 11832 true chromosome_2: 7662336-7674167 Chlamydomonas reinhardtii
Cre02.g143200 1.0kb upstream 1.0kb upstream 1000 false chromosome_2: 7662336-7663335 Chlamydomonas reinhardtii
Cre02.g143200 1.0kb downstream 1.0kb downstream 11832 true chromosome_2: 7663336-7675167 Chlamydomonas reinhardtii
Cre02.g143200 1.0kb downstream 1.0kb downstream 1000 false chromosome_2: 7674168-7675167 Chlamydomonas reinhardtii
Cre02.g143200 2.0kb upstream 2.0kb upstream 12832 true chromosome_2: 7661336-7674167 Chlamydomonas reinhardtii
Cre02.g143200 2.0kb upstream 2.0kb upstream 2000 false chromosome_2: 7661336-7663335 Chlamydomonas reinhardtii
Cre02.g143200 2.0kb downstream 2.0kb downstream 12832 true chromosome_2: 7663336-7676167 Chlamydomonas reinhardtii
Cre02.g143200 2.0kb downstream 2.0kb downstream 2000 false chromosome_2: 7674168-7676167 Chlamydomonas reinhardtii
Cre02.g143200 5.0kb upstream 5.0kb upstream 15832 true chromosome_2: 7658336-7674167 Chlamydomonas reinhardtii
Cre02.g143200 5.0kb upstream 5.0kb upstream 5000 false chromosome_2: 7658336-7663335 Chlamydomonas reinhardtii
Cre02.g143200 5.0kb downstream 5.0kb downstream 15832 true chromosome_2: 7663336-7679167 Chlamydomonas reinhardtii
Cre02.g143200 5.0kb downstream 5.0kb downstream 5000 false chromosome_2: 7674168-7679167 Chlamydomonas reinhardtii
Cre02.g143200 10.0kb upstream 10.0kb upstream 20832 true chromosome_2: 7653336-7674167 Chlamydomonas reinhardtii
Cre02.g143200 10.0kb upstream 10.0kb upstream 10000 false chromosome_2: 7653336-7663335 Chlamydomonas reinhardtii
Cre02.g143200 10.0kb downstream 10.0kb downstream 20832 true chromosome_2: 7663336-7684167 Chlamydomonas reinhardtii
Cre02.g143200 10.0kb downstream 10.0kb downstream 10000 false chromosome_2: 7674168-7684167 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110349 5260 Chlorophyte View MSA
123424131 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.787        
cufflinks 9.68        
cufflinks 6.9        
cufflinks 5.439        
cufflinks 8.969        
cufflinks 6.545        
cufflinks 4.777        
cufflinks 6.393        
cufflinks 10.365       High
cufflinks 1.5       Low
cufflinks 5.836        
cufflinks 6.028        
cufflinks 3.451        
cufflinks 7.966        
cufflinks 4.48        
cufflinks 10.837       High
cufflinks 8.071        
cufflinks 7.545        
cufflinks 0.587       Low
cufflinks 2.387       Low
cufflinks 5.213        
cufflinks 6.237        
cufflinks 3.356        
cufflinks 7.141        
cufflinks 8.034        
cufflinks 71.8464 0.0 147.326 High Low
cufflinks 89.0402 14.9203 163.16 High High
cufflinks 41.3133 0.0 85.6673 High  
cufflinks 25.0741 0.0 50.5024 High Low
cufflinks 59.3334 1.91805 116.749 High High

0 Strain