Gene : FAP88 C. reinhardtii v5.6
Primary Identifier:  ? Cre17.g718900 Defline:  (1 of 1) PTHR23237:SF6 - H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1
Genomic Order:  505 Name:  ? Cre17.g718900
Secondary Identifier:  ? PAC:30782006
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre17.g718900 0.5kb upstream 0.5kb upstream 9542 true chromosome_17: 2801682-2811223 Chlamydomonas reinhardtii
Cre17.g718900 0.5kb upstream 0.5kb upstream 500 false chromosome_17: 2801682-2802181 Chlamydomonas reinhardtii
Cre17.g718900 0.5kb downstream 0.5kb downstream 9542 true chromosome_17: 2802182-2811723 Chlamydomonas reinhardtii
Cre17.g718900 0.5kb downstream 0.5kb downstream 500 false chromosome_17: 2811224-2811723 Chlamydomonas reinhardtii
Cre17.g718900 1.0kb upstream 1.0kb upstream 10042 true chromosome_17: 2801182-2811223 Chlamydomonas reinhardtii
Cre17.g718900 1.0kb upstream 1.0kb upstream 1000 false chromosome_17: 2801182-2802181 Chlamydomonas reinhardtii
Cre17.g718900 1.0kb downstream 1.0kb downstream 10042 true chromosome_17: 2802182-2812223 Chlamydomonas reinhardtii
Cre17.g718900 1.0kb downstream 1.0kb downstream 1000 false chromosome_17: 2811224-2812223 Chlamydomonas reinhardtii
Cre17.g718900 2.0kb upstream 2.0kb upstream 11042 true chromosome_17: 2800182-2811223 Chlamydomonas reinhardtii
Cre17.g718900 2.0kb upstream 2.0kb upstream 2000 false chromosome_17: 2800182-2802181 Chlamydomonas reinhardtii
Cre17.g718900 2.0kb downstream 2.0kb downstream 11042 true chromosome_17: 2802182-2813223 Chlamydomonas reinhardtii
Cre17.g718900 2.0kb downstream 2.0kb downstream 2000 false chromosome_17: 2811224-2813223 Chlamydomonas reinhardtii
Cre17.g718900 5.0kb upstream 5.0kb upstream 14042 true chromosome_17: 2797182-2811223 Chlamydomonas reinhardtii
Cre17.g718900 5.0kb upstream 5.0kb upstream 5000 false chromosome_17: 2797182-2802181 Chlamydomonas reinhardtii
Cre17.g718900 5.0kb downstream 5.0kb downstream 14042 true chromosome_17: 2802182-2816223 Chlamydomonas reinhardtii
Cre17.g718900 5.0kb downstream 5.0kb downstream 5000 false chromosome_17: 2811224-2816223 Chlamydomonas reinhardtii
Cre17.g718900 10.0kb upstream 10.0kb upstream 19042 true chromosome_17: 2792182-2811223 Chlamydomonas reinhardtii
Cre17.g718900 10.0kb upstream 10.0kb upstream 10000 false chromosome_17: 2792182-2802181 Chlamydomonas reinhardtii
Cre17.g718900 10.0kb downstream 10.0kb downstream 19042 true chromosome_17: 2802182-2821223 Chlamydomonas reinhardtii
Cre17.g718900 10.0kb downstream 10.0kb downstream 10000 false chromosome_17: 2811224-2821223 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124078677 5260 Chlorophyte Singleton cluster - no MSA
123396588 5275 Viridiplantae Singleton cluster - no MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.546       Low
cufflinks 2.41        
cufflinks 3.535       High
cufflinks 5.603       High
cufflinks 1.397        
cufflinks 1.604        
cufflinks 1.627        
cufflinks 2.607        
cufflinks 0.453       Low
cufflinks 0.426       Low
cufflinks 8.948       High
cufflinks 2.336        
cufflinks 0.531       Low
cufflinks 1.681        
cufflinks 3.492        
cufflinks 0.624        
cufflinks 0.698        
cufflinks 2.061        
cufflinks 0.358       Low
cufflinks 1.968        
cufflinks 3.496        
cufflinks 0.761        
cufflinks 1.442        
cufflinks 2.952        
cufflinks 0.561       Low
cufflinks 2.23643 0.363162 4.10971   High
cufflinks 10.0946 2.74729 17.442    
cufflinks 6.91859 0.0 13.905    
cufflinks 3.83759 0.615621 7.05955    
cufflinks 6.67558 1.32615 12.025    

0 Strain