Gene : VPS28 C. reinhardtii v5.6
Primary Identifier:  ? Cre16.g678100 Defline:  (1 of 1) K12184 - ESCRT-I complex subunit VPS28 (VPS28)
Genomic Order:  974 Name:  ? Cre16.g678100
Secondary Identifier:  ? PAC:30777253
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g678100 0.5kb upstream 0.5kb upstream 2912 true chromosome_16: 5806561-5809472 Chlamydomonas reinhardtii
Cre16.g678100 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 5806561-5807060 Chlamydomonas reinhardtii
Cre16.g678100 0.5kb downstream 0.5kb downstream 2912 true chromosome_16: 5807061-5809972 Chlamydomonas reinhardtii
Cre16.g678100 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 5809473-5809972 Chlamydomonas reinhardtii
Cre16.g678100 1.0kb upstream 1.0kb upstream 3412 true chromosome_16: 5806061-5809472 Chlamydomonas reinhardtii
Cre16.g678100 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 5806061-5807060 Chlamydomonas reinhardtii
Cre16.g678100 1.0kb downstream 1.0kb downstream 3412 true chromosome_16: 5807061-5810472 Chlamydomonas reinhardtii
Cre16.g678100 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 5809473-5810472 Chlamydomonas reinhardtii
Cre16.g678100 2.0kb upstream 2.0kb upstream 4412 true chromosome_16: 5805061-5809472 Chlamydomonas reinhardtii
Cre16.g678100 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 5805061-5807060 Chlamydomonas reinhardtii
Cre16.g678100 2.0kb downstream 2.0kb downstream 4412 true chromosome_16: 5807061-5811472 Chlamydomonas reinhardtii
Cre16.g678100 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 5809473-5811472 Chlamydomonas reinhardtii
Cre16.g678100 5.0kb upstream 5.0kb upstream 7412 true chromosome_16: 5802061-5809472 Chlamydomonas reinhardtii
Cre16.g678100 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 5802061-5807060 Chlamydomonas reinhardtii
Cre16.g678100 5.0kb downstream 5.0kb downstream 7412 true chromosome_16: 5807061-5814472 Chlamydomonas reinhardtii
Cre16.g678100 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 5809473-5814472 Chlamydomonas reinhardtii
Cre16.g678100 10.0kb upstream 10.0kb upstream 12412 true chromosome_16: 5797061-5809472 Chlamydomonas reinhardtii
Cre16.g678100 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 5797061-5807060 Chlamydomonas reinhardtii
Cre16.g678100 10.0kb downstream 10.0kb downstream 12412 true chromosome_16: 5807061-5819472 Chlamydomonas reinhardtii
Cre16.g678100 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 5809473-5819472 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110386 5260 Chlorophyte View MSA
123425897 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.666     High  
cufflinks 13.439        
cufflinks 23.502     High High
cufflinks 17.121     High  
cufflinks 16.738     High  
cufflinks 16.203     High  
cufflinks 18.401     High  
cufflinks 15.707        
cufflinks 15.97     High  
cufflinks 15.894     High  
cufflinks 14.151     High  
cufflinks 17.198     High  
cufflinks 19.098     High  
cufflinks 14.862     High  
cufflinks 13.395     High  
cufflinks 18.261     High  
cufflinks 13.072     High  
cufflinks 24.178     High High
cufflinks 7.632     High Low
cufflinks 18.003     High  
cufflinks 11.822       Low
cufflinks 12.165     High  
cufflinks 15.002     High  
cufflinks 16.169     High  
cufflinks 10.888       Low
cufflinks 46.4943 0.299112 92.6894 High  
cufflinks 9.66024 2.49003 16.8304    
cufflinks 12.5866 0.0 25.3173    
cufflinks 9.48623 1.50297 17.4695   Low
cufflinks 14.5493 2.91642 26.1821    

0 Strain