Gene : LHCBM2 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g548400 Defline:  (1 of 3) K08913 - light-harvesting complex II chlorophyll a/b binding protein 2 (LHCB2)
Genomic Order:  1542 Name:  ? Cre12.g548400
Secondary Identifier:  ? PAC:30793460
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PHOTOALL-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-101 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7731 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g548400 0.5kb upstream 0.5kb upstream 2430 true chromosome_12: 8441637-8444066 Chlamydomonas reinhardtii
Cre12.g548400 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 8443567-8444066 Chlamydomonas reinhardtii
Cre12.g548400 0.5kb downstream 0.5kb downstream 2430 true chromosome_12: 8441137-8443566 Chlamydomonas reinhardtii
Cre12.g548400 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 8441137-8441636 Chlamydomonas reinhardtii
Cre12.g548400 1.0kb upstream 1.0kb upstream 2930 true chromosome_12: 8441637-8444566 Chlamydomonas reinhardtii
Cre12.g548400 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 8443567-8444566 Chlamydomonas reinhardtii
Cre12.g548400 1.0kb downstream 1.0kb downstream 2930 true chromosome_12: 8440637-8443566 Chlamydomonas reinhardtii
Cre12.g548400 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 8440637-8441636 Chlamydomonas reinhardtii
Cre12.g548400 2.0kb upstream 2.0kb upstream 3930 true chromosome_12: 8441637-8445566 Chlamydomonas reinhardtii
Cre12.g548400 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 8443567-8445566 Chlamydomonas reinhardtii
Cre12.g548400 2.0kb downstream 2.0kb downstream 3930 true chromosome_12: 8439637-8443566 Chlamydomonas reinhardtii
Cre12.g548400 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 8439637-8441636 Chlamydomonas reinhardtii
Cre12.g548400 5.0kb upstream 5.0kb upstream 6930 true chromosome_12: 8441637-8448566 Chlamydomonas reinhardtii
Cre12.g548400 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 8443567-8448566 Chlamydomonas reinhardtii
Cre12.g548400 5.0kb downstream 5.0kb downstream 6930 true chromosome_12: 8436637-8443566 Chlamydomonas reinhardtii
Cre12.g548400 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 8436637-8441636 Chlamydomonas reinhardtii
Cre12.g548400 10.0kb upstream 10.0kb upstream 11930 true chromosome_12: 8441637-8453566 Chlamydomonas reinhardtii
Cre12.g548400 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 8443567-8453566 Chlamydomonas reinhardtii
Cre12.g548400 10.0kb downstream 10.0kb downstream 11930 true chromosome_12: 8431637-8443566 Chlamydomonas reinhardtii
Cre12.g548400 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 8431637-8441636 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113612 5260 Chlorophyte View MSA
123426313 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4197.7     High  
cufflinks 3904.93     High  
cufflinks 2908.81     High  
cufflinks 2787.56     High  
cufflinks 3564.08     High  
cufflinks 3908.04     High  
cufflinks 2365.13     High  
cufflinks 3892.46     High  
cufflinks 4866.31     High  
cufflinks 3101.81     High  
cufflinks 1718.7     High Low
cufflinks 3985.22     High  
cufflinks 3702.63     High  
cufflinks 3681.7     High  
cufflinks 3861.86     High  
cufflinks 4324.8     High  
cufflinks 5224.76     High  
cufflinks 3359.06     High  
cufflinks 1504.89     High Low
cufflinks 575.622     High Low
cufflinks 3881.18     High  
cufflinks 5956.98     High High
cufflinks 953.754     High Low
cufflinks 2458.09     High  
cufflinks 5858.23     High High
cufflinks 1926.28 329.212 3523.34 High High
cufflinks 4976.46 122.618 9830.31 High  
cufflinks 4257.25 0.0 9099.75 High  
cufflinks 2171.1 410.083 3932.12 High  
cufflinks 4792.98 624.6 8961.35 High  

0 Strain