Gene : LHCBM7 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g548950 Defline:  (1 of 3) K08913 - light-harvesting complex II chlorophyll a/b binding protein 2 (LHCB2)
Genomic Order:  1530 Name:  ? Cre12.g548950
Secondary Identifier:  ? PAC:30793494
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PHOTOALL-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-101 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7731 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g548950 0.5kb upstream 0.5kb upstream 2185 true chromosome_12: 8389564-8391748 Chlamydomonas reinhardtii
Cre12.g548950 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 8389564-8390063 Chlamydomonas reinhardtii
Cre12.g548950 0.5kb downstream 0.5kb downstream 2185 true chromosome_12: 8390064-8392248 Chlamydomonas reinhardtii
Cre12.g548950 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 8391749-8392248 Chlamydomonas reinhardtii
Cre12.g548950 1.0kb upstream 1.0kb upstream 2685 true chromosome_12: 8389064-8391748 Chlamydomonas reinhardtii
Cre12.g548950 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 8389064-8390063 Chlamydomonas reinhardtii
Cre12.g548950 1.0kb downstream 1.0kb downstream 2685 true chromosome_12: 8390064-8392748 Chlamydomonas reinhardtii
Cre12.g548950 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 8391749-8392748 Chlamydomonas reinhardtii
Cre12.g548950 2.0kb upstream 2.0kb upstream 3685 true chromosome_12: 8388064-8391748 Chlamydomonas reinhardtii
Cre12.g548950 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 8388064-8390063 Chlamydomonas reinhardtii
Cre12.g548950 2.0kb downstream 2.0kb downstream 3685 true chromosome_12: 8390064-8393748 Chlamydomonas reinhardtii
Cre12.g548950 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 8391749-8393748 Chlamydomonas reinhardtii
Cre12.g548950 5.0kb upstream 5.0kb upstream 6685 true chromosome_12: 8385064-8391748 Chlamydomonas reinhardtii
Cre12.g548950 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 8385064-8390063 Chlamydomonas reinhardtii
Cre12.g548950 5.0kb downstream 5.0kb downstream 6685 true chromosome_12: 8390064-8396748 Chlamydomonas reinhardtii
Cre12.g548950 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 8391749-8396748 Chlamydomonas reinhardtii
Cre12.g548950 10.0kb upstream 10.0kb upstream 11685 true chromosome_12: 8380064-8391748 Chlamydomonas reinhardtii
Cre12.g548950 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 8380064-8390063 Chlamydomonas reinhardtii
Cre12.g548950 10.0kb downstream 10.0kb downstream 11685 true chromosome_12: 8390064-8401748 Chlamydomonas reinhardtii
Cre12.g548950 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 8391749-8401748 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113612 5260 Chlorophyte View MSA
123426313 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8754.67     High  
cufflinks 8379.97     High  
cufflinks 7266.72     High  
cufflinks 5643.48     High  
cufflinks 7919.65     High  
cufflinks 9915.33     High  
cufflinks 3812.84     High  
cufflinks 7333.09     High  
cufflinks 9688.62     High  
cufflinks 10499.9     High  
cufflinks 3909.82     High  
cufflinks 7469.28     High  
cufflinks 11163.0     High  
cufflinks 8078.59     High  
cufflinks 8195.78     High  
cufflinks 7361.47     High  
cufflinks 7714.83     High  
cufflinks 8605.99     High  
cufflinks 1141.86     High Low
cufflinks 530.622     High Low
cufflinks 8375.17     High  
cufflinks 9257.86     High  
cufflinks 1573.4     High Low
cufflinks 5490.0     High  
cufflinks 9141.5     High  
cufflinks 5147.51 1753.23 8541.8 High High
cufflinks 8920.39 104.087 17736.7 High  
cufflinks 5485.0 0.0 11713.7 High  
cufflinks 3964.83 1111.55 6818.11 High  
cufflinks 10178.2 10129.4 10227.0 High  

0 Strain