Gene : CAV8 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g532350 Defline:  (1 of 3) PF00520//PF08016 - Ion transport protein (Ion_trans) // Polycystin cation channel (PKD_channel)
Genomic Order:  1080 Name:  ? Cre12.g532350
Secondary Identifier:  ? PAC:30792883
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g532350 0.5kb upstream 0.5kb upstream 23560 true chromosome_12: 5646909-5670468 Chlamydomonas reinhardtii
Cre12.g532350 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 5669969-5670468 Chlamydomonas reinhardtii
Cre12.g532350 0.5kb downstream 0.5kb downstream 23560 true chromosome_12: 5646409-5669968 Chlamydomonas reinhardtii
Cre12.g532350 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 5646409-5646908 Chlamydomonas reinhardtii
Cre12.g532350 1.0kb upstream 1.0kb upstream 24060 true chromosome_12: 5646909-5670968 Chlamydomonas reinhardtii
Cre12.g532350 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 5669969-5670968 Chlamydomonas reinhardtii
Cre12.g532350 1.0kb downstream 1.0kb downstream 24060 true chromosome_12: 5645909-5669968 Chlamydomonas reinhardtii
Cre12.g532350 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 5645909-5646908 Chlamydomonas reinhardtii
Cre12.g532350 2.0kb upstream 2.0kb upstream 25060 true chromosome_12: 5646909-5671968 Chlamydomonas reinhardtii
Cre12.g532350 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 5669969-5671968 Chlamydomonas reinhardtii
Cre12.g532350 2.0kb downstream 2.0kb downstream 25060 true chromosome_12: 5644909-5669968 Chlamydomonas reinhardtii
Cre12.g532350 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 5644909-5646908 Chlamydomonas reinhardtii
Cre12.g532350 5.0kb upstream 5.0kb upstream 28060 true chromosome_12: 5646909-5674968 Chlamydomonas reinhardtii
Cre12.g532350 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 5669969-5674968 Chlamydomonas reinhardtii
Cre12.g532350 5.0kb downstream 5.0kb downstream 28060 true chromosome_12: 5641909-5669968 Chlamydomonas reinhardtii
Cre12.g532350 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 5641909-5646908 Chlamydomonas reinhardtii
Cre12.g532350 10.0kb upstream 10.0kb upstream 33060 true chromosome_12: 5646909-5679968 Chlamydomonas reinhardtii
Cre12.g532350 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 5669969-5679968 Chlamydomonas reinhardtii
Cre12.g532350 10.0kb downstream 10.0kb downstream 33060 true chromosome_12: 5636909-5669968 Chlamydomonas reinhardtii
Cre12.g532350 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 5636909-5646908 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124081231 5260 Chlorophyte Singleton cluster - no MSA
123398971 5275 Viridiplantae Singleton cluster - no MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.354       Low
cufflinks 1.117        
cufflinks 1.019        
cufflinks 1.104        
cufflinks 0.779        
cufflinks 0.903        
cufflinks 1.211        
cufflinks 1.217        
cufflinks 0.491       Low
cufflinks 0.283       Low
cufflinks 1.298        
cufflinks 1.289        
cufflinks 0.502       Low
cufflinks 0.743        
cufflinks 1.209        
cufflinks 0.433       Low
cufflinks 0.617        
cufflinks 0.869        
cufflinks 0.399       Low
cufflinks 1.159        
cufflinks 1.157        
cufflinks 0.758        
cufflinks 1.379       High
cufflinks 1.224        
cufflinks 0.829        
cufflinks 2.50502 0.239644 4.77039    
cufflinks 2.66642 0.728198 4.60463    
cufflinks 1.44371 0.0 2.92902    
cufflinks 2.17985 0.239346 4.12035    
cufflinks 2.18572 0.432611 3.93883    

0 Strain