Gene : IFT56 C. reinhardtii v5.6
Primary Identifier:  ? Cre11.g467616 Defline:  (1 of 1) PTHR14781//PTHR14781:SF0 - UNCHARACTERIZED // TETRATRICOPEPTIDE REPEAT PROTEIN 26
Genomic Order:  93 Name:  ? Cre11.g467616
Secondary Identifier:  ? PAC:30775497
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre11.g467616 0.5kb upstream 0.5kb upstream 7674 true chromosome_11: 633842-641515 Chlamydomonas reinhardtii
Cre11.g467616 0.5kb upstream 0.5kb upstream 500 false chromosome_11: 641016-641515 Chlamydomonas reinhardtii
Cre11.g467616 0.5kb downstream 0.5kb downstream 7674 true chromosome_11: 633342-641015 Chlamydomonas reinhardtii
Cre11.g467616 0.5kb downstream 0.5kb downstream 500 false chromosome_11: 633342-633841 Chlamydomonas reinhardtii
Cre11.g467616 1.0kb upstream 1.0kb upstream 8174 true chromosome_11: 633842-642015 Chlamydomonas reinhardtii
Cre11.g467616 1.0kb upstream 1.0kb upstream 1000 false chromosome_11: 641016-642015 Chlamydomonas reinhardtii
Cre11.g467616 1.0kb downstream 1.0kb downstream 8174 true chromosome_11: 632842-641015 Chlamydomonas reinhardtii
Cre11.g467616 1.0kb downstream 1.0kb downstream 1000 false chromosome_11: 632842-633841 Chlamydomonas reinhardtii
Cre11.g467616 2.0kb upstream 2.0kb upstream 9174 true chromosome_11: 633842-643015 Chlamydomonas reinhardtii
Cre11.g467616 2.0kb upstream 2.0kb upstream 2000 false chromosome_11: 641016-643015 Chlamydomonas reinhardtii
Cre11.g467616 2.0kb downstream 2.0kb downstream 9174 true chromosome_11: 631842-641015 Chlamydomonas reinhardtii
Cre11.g467616 2.0kb downstream 2.0kb downstream 2000 false chromosome_11: 631842-633841 Chlamydomonas reinhardtii
Cre11.g467616 5.0kb upstream 5.0kb upstream 12174 true chromosome_11: 633842-646015 Chlamydomonas reinhardtii
Cre11.g467616 5.0kb upstream 5.0kb upstream 5000 false chromosome_11: 641016-646015 Chlamydomonas reinhardtii
Cre11.g467616 5.0kb downstream 5.0kb downstream 12174 true chromosome_11: 628842-641015 Chlamydomonas reinhardtii
Cre11.g467616 5.0kb downstream 5.0kb downstream 5000 false chromosome_11: 628842-633841 Chlamydomonas reinhardtii
Cre11.g467616 10.0kb upstream 10.0kb upstream 17174 true chromosome_11: 633842-651015 Chlamydomonas reinhardtii
Cre11.g467616 10.0kb upstream 10.0kb upstream 10000 false chromosome_11: 641016-651015 Chlamydomonas reinhardtii
Cre11.g467616 10.0kb downstream 10.0kb downstream 17174 true chromosome_11: 623842-641015 Chlamydomonas reinhardtii
Cre11.g467616 10.0kb downstream 10.0kb downstream 10000 false chromosome_11: 623842-633841 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108332 5260 Chlorophyte View MSA
123427301 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.546       Low
cufflinks 12.884        
cufflinks 14.745     High  
cufflinks 22.505     High High
cufflinks 10.07        
cufflinks 9.735        
cufflinks 8.317        
cufflinks 13.264        
cufflinks 2.187       Low
cufflinks 3.217       Low
cufflinks 25.218     High High
cufflinks 10.064        
cufflinks 3.817        
cufflinks 10.675        
cufflinks 14.422     High  
cufflinks 3.19       Low
cufflinks 3.376        
cufflinks 11.014        
cufflinks 2.098       Low
cufflinks 10.956        
cufflinks 14.468     High  
cufflinks 3.027       Low
cufflinks 7.987        
cufflinks 10.226        
cufflinks 2.136       Low
cufflinks 8.20184 0.893968 15.5097   High
cufflinks 17.2047 4.56704 29.8425    
cufflinks 23.1472 0.0 47.3507    
cufflinks 14.9083 0.729061 29.0875    
cufflinks 22.2842 2.82619 41.7422    

0 Strain