Gene : Cre01.g040650 C. reinhardtii v5.6
Defline:  (1 of 7) PF06011 - Transient receptor potential (TRP) ion channel (TRP) Genomic Order:  883
Name:  ? Cre01.g040650 Secondary Identifier:  ? PAC:30789598
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g040650 0.5kb upstream 0.5kb upstream 8556 true chromosome_1: 5704932-5713487 Chlamydomonas reinhardtii
Cre01.g040650 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 5712988-5713487 Chlamydomonas reinhardtii
Cre01.g040650 0.5kb downstream 0.5kb downstream 8556 true chromosome_1: 5704432-5712987 Chlamydomonas reinhardtii
Cre01.g040650 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 5704432-5704931 Chlamydomonas reinhardtii
Cre01.g040650 1.0kb upstream 1.0kb upstream 9056 true chromosome_1: 5704932-5713987 Chlamydomonas reinhardtii
Cre01.g040650 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 5712988-5713987 Chlamydomonas reinhardtii
Cre01.g040650 1.0kb downstream 1.0kb downstream 9056 true chromosome_1: 5703932-5712987 Chlamydomonas reinhardtii
Cre01.g040650 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 5703932-5704931 Chlamydomonas reinhardtii
Cre01.g040650 2.0kb upstream 2.0kb upstream 10056 true chromosome_1: 5704932-5714987 Chlamydomonas reinhardtii
Cre01.g040650 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 5712988-5714987 Chlamydomonas reinhardtii
Cre01.g040650 2.0kb downstream 2.0kb downstream 10056 true chromosome_1: 5702932-5712987 Chlamydomonas reinhardtii
Cre01.g040650 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 5702932-5704931 Chlamydomonas reinhardtii
Cre01.g040650 5.0kb upstream 5.0kb upstream 13056 true chromosome_1: 5704932-5717987 Chlamydomonas reinhardtii
Cre01.g040650 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 5712988-5717987 Chlamydomonas reinhardtii
Cre01.g040650 5.0kb downstream 5.0kb downstream 13056 true chromosome_1: 5699932-5712987 Chlamydomonas reinhardtii
Cre01.g040650 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 5699932-5704931 Chlamydomonas reinhardtii
Cre01.g040650 10.0kb upstream 10.0kb upstream 18056 true chromosome_1: 5704932-5722987 Chlamydomonas reinhardtii
Cre01.g040650 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 5712988-5722987 Chlamydomonas reinhardtii
Cre01.g040650 10.0kb downstream 10.0kb downstream 18056 true chromosome_1: 5694932-5712987 Chlamydomonas reinhardtii
Cre01.g040650 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 5694932-5704931 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124080494 5260 Chlorophyte Singleton cluster - no MSA
123398275 5275 Viridiplantae Singleton cluster - no MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low Low
cufflinks 0.051     Low  
cufflinks 0.053     Low  
cufflinks 0.071     Low  
cufflinks 0.057     Low  
cufflinks 0.036     Low  
cufflinks 0.055     Low  
cufflinks 0.078     Low  
cufflinks 0.055     Low  
cufflinks 0.026     Low Low
cufflinks 0.078     Low  
cufflinks 0.068     Low  
cufflinks 0.03     Low  
cufflinks 0.022     Low Low
cufflinks 0.058     Low  
cufflinks 0.052     Low  
cufflinks 0.108     Low High
cufflinks 0.039     Low  
cufflinks 0.015     Low Low
cufflinks 0.079     Low  
cufflinks 0.044     Low  
cufflinks 0.038     Low  
cufflinks 0.044     Low  
cufflinks 0.095     Low High
cufflinks 0.076     Low  
cufflinks 0.58709 0.0 1.32435   Low
cufflinks 0.834217 0.0 1.84321    
cufflinks 0.700547 0.0 2.13137    
cufflinks 0.990289 0.0 2.10687    
cufflinks 1.96062 0.0253448 3.8959    

0 Strain