Gene : HLM1 C. reinhardtii v5.6
Primary Identifier:  ? Cre01.g004350 Defline:  (1 of 1) K12200 - programmed cell death 6-interacting protein (PDCD6IP, ALIX, RIM20)
Genomic Order:  103 Name:  ? Cre01.g004350
Secondary Identifier:  ? PAC:30788641
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g004350 0.5kb upstream 0.5kb upstream 9550 true chromosome_1: 841029-850578 Chlamydomonas reinhardtii
Cre01.g004350 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 841029-841528 Chlamydomonas reinhardtii
Cre01.g004350 0.5kb downstream 0.5kb downstream 9550 true chromosome_1: 841529-851078 Chlamydomonas reinhardtii
Cre01.g004350 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 850579-851078 Chlamydomonas reinhardtii
Cre01.g004350 1.0kb upstream 1.0kb upstream 10050 true chromosome_1: 840529-850578 Chlamydomonas reinhardtii
Cre01.g004350 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 840529-841528 Chlamydomonas reinhardtii
Cre01.g004350 1.0kb downstream 1.0kb downstream 10050 true chromosome_1: 841529-851578 Chlamydomonas reinhardtii
Cre01.g004350 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 850579-851578 Chlamydomonas reinhardtii
Cre01.g004350 2.0kb upstream 2.0kb upstream 11050 true chromosome_1: 839529-850578 Chlamydomonas reinhardtii
Cre01.g004350 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 839529-841528 Chlamydomonas reinhardtii
Cre01.g004350 2.0kb downstream 2.0kb downstream 11050 true chromosome_1: 841529-852578 Chlamydomonas reinhardtii
Cre01.g004350 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 850579-852578 Chlamydomonas reinhardtii
Cre01.g004350 5.0kb upstream 5.0kb upstream 14050 true chromosome_1: 836529-850578 Chlamydomonas reinhardtii
Cre01.g004350 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 836529-841528 Chlamydomonas reinhardtii
Cre01.g004350 5.0kb downstream 5.0kb downstream 14050 true chromosome_1: 841529-855578 Chlamydomonas reinhardtii
Cre01.g004350 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 850579-855578 Chlamydomonas reinhardtii
Cre01.g004350 10.0kb upstream 10.0kb upstream 19050 true chromosome_1: 831529-850578 Chlamydomonas reinhardtii
Cre01.g004350 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 831529-841528 Chlamydomonas reinhardtii
Cre01.g004350 10.0kb downstream 10.0kb downstream 19050 true chromosome_1: 841529-860578 Chlamydomonas reinhardtii
Cre01.g004350 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 850579-860578 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109440 5260 Chlorophyte View MSA
123423848 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.507        
cufflinks 3.008        
cufflinks 3.006        
cufflinks 2.862        
cufflinks 4.03       High
cufflinks 2.622        
cufflinks 3.31        
cufflinks 2.941        
cufflinks 2.399        
cufflinks 2.525        
cufflinks 2.112        
cufflinks 3.264        
cufflinks 2.29        
cufflinks 3.132        
cufflinks 2.104        
cufflinks 2.973        
cufflinks 3.813        
cufflinks 5.609       High
cufflinks 0.761       Low
cufflinks 4.306       High
cufflinks 2.578        
cufflinks 2.837        
cufflinks 2.864        
cufflinks 2.807        
cufflinks 2.951        
cufflinks 29.7001 0.0 60.109 High High
cufflinks 13.2518 3.55315 22.9504    
cufflinks 8.76863 0.0 17.623   Low
cufflinks 6.28956 0.799315 11.7798    
cufflinks 9.00795 1.67578 16.3401    

0 Strain