Gene : Cucsa.075520 C. sativus v1.0
Defline:  (1 of 1) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  28
Name:  ? Cucsa.075520 Secondary Identifier:  ? PAC:16955742
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PWY-5409 Cucumis sativus pathologic  
Csativus PWY-5410 Cucumis sativus pathologic  
Csativus PWY-735 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.075520 0.5kb upstream 0.5kb upstream 5203 true scaffold00789: 183130-188332 Cucumis sativus
Cucsa.075520 0.5kb upstream 0.5kb upstream 500 false scaffold00789: 187833-188332 Cucumis sativus
Cucsa.075520 0.5kb downstream 0.5kb downstream 5203 true scaffold00789: 182630-187832 Cucumis sativus
Cucsa.075520 0.5kb downstream 0.5kb downstream 500 false scaffold00789: 182630-183129 Cucumis sativus
Cucsa.075520 1.0kb upstream 1.0kb upstream 5703 true scaffold00789: 183130-188832 Cucumis sativus
Cucsa.075520 1.0kb upstream 1.0kb upstream 1000 false scaffold00789: 187833-188832 Cucumis sativus
Cucsa.075520 1.0kb downstream 1.0kb downstream 5703 true scaffold00789: 182130-187832 Cucumis sativus
Cucsa.075520 1.0kb downstream 1.0kb downstream 1000 false scaffold00789: 182130-183129 Cucumis sativus
Cucsa.075520 2.0kb upstream 2.0kb upstream 6703 true scaffold00789: 183130-189832 Cucumis sativus
Cucsa.075520 2.0kb upstream 2.0kb upstream 2000 false scaffold00789: 187833-189832 Cucumis sativus
Cucsa.075520 2.0kb downstream 2.0kb downstream 6703 true scaffold00789: 181130-187832 Cucumis sativus
Cucsa.075520 2.0kb downstream 2.0kb downstream 2000 false scaffold00789: 181130-183129 Cucumis sativus
Cucsa.075520 5.0kb upstream 5.0kb upstream 9703 true scaffold00789: 183130-192832 Cucumis sativus
Cucsa.075520 5.0kb upstream 5.0kb upstream 5000 false scaffold00789: 187833-192832 Cucumis sativus
Cucsa.075520 5.0kb downstream 5.0kb downstream 9703 true scaffold00789: 178130-187832 Cucumis sativus
Cucsa.075520 5.0kb downstream 5.0kb downstream 5000 false scaffold00789: 178130-183129 Cucumis sativus
Cucsa.075520 10.0kb upstream 10.0kb upstream 14703 true scaffold00789: 183130-197832 Cucumis sativus
Cucsa.075520 10.0kb upstream 10.0kb upstream 10000 false scaffold00789: 187833-197832 Cucumis sativus
Cucsa.075520 10.0kb downstream 10.0kb downstream 14703 true scaffold00789: 173130-187832 Cucumis sativus
Cucsa.075520 10.0kb downstream 10.0kb downstream 10000 false scaffold00789: 173130-183129 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299758 5265 Fabidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain