Gene : Cucsa.005440 C. sativus v1.0
Defline:  (1 of 4) PF04431 - Pectate lyase, N terminus (Pec_lyase_N) Genomic Order:  53
Name:  ? Cucsa.005440 Secondary Identifier:  ? PAC:16951152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.005440 0.5kb upstream 0.5kb upstream 2040 true scaffold00055: 535310-537349 Cucumis sativus
Cucsa.005440 0.5kb upstream 0.5kb upstream 500 false scaffold00055: 536850-537349 Cucumis sativus
Cucsa.005440 0.5kb downstream 0.5kb downstream 2040 true scaffold00055: 534810-536849 Cucumis sativus
Cucsa.005440 0.5kb downstream 0.5kb downstream 500 false scaffold00055: 534810-535309 Cucumis sativus
Cucsa.005440 1.0kb upstream 1.0kb upstream 2540 true scaffold00055: 535310-537849 Cucumis sativus
Cucsa.005440 1.0kb upstream 1.0kb upstream 1000 false scaffold00055: 536850-537849 Cucumis sativus
Cucsa.005440 1.0kb downstream 1.0kb downstream 2540 true scaffold00055: 534310-536849 Cucumis sativus
Cucsa.005440 1.0kb downstream 1.0kb downstream 1000 false scaffold00055: 534310-535309 Cucumis sativus
Cucsa.005440 2.0kb upstream 2.0kb upstream 3540 true scaffold00055: 535310-538849 Cucumis sativus
Cucsa.005440 2.0kb upstream 2.0kb upstream 2000 false scaffold00055: 536850-538849 Cucumis sativus
Cucsa.005440 2.0kb downstream 2.0kb downstream 3540 true scaffold00055: 533310-536849 Cucumis sativus
Cucsa.005440 2.0kb downstream 2.0kb downstream 2000 false scaffold00055: 533310-535309 Cucumis sativus
Cucsa.005440 5.0kb upstream 5.0kb upstream 6540 true scaffold00055: 535310-541849 Cucumis sativus
Cucsa.005440 5.0kb upstream 5.0kb upstream 5000 false scaffold00055: 536850-541849 Cucumis sativus
Cucsa.005440 5.0kb downstream 5.0kb downstream 6540 true scaffold00055: 530310-536849 Cucumis sativus
Cucsa.005440 5.0kb downstream 5.0kb downstream 5000 false scaffold00055: 530310-535309 Cucumis sativus
Cucsa.005440 10.0kb upstream 10.0kb upstream 11540 true scaffold00055: 535310-546849 Cucumis sativus
Cucsa.005440 10.0kb upstream 10.0kb upstream 10000 false scaffold00055: 536850-546849 Cucumis sativus
Cucsa.005440 10.0kb downstream 10.0kb downstream 11540 true scaffold00055: 525310-536849 Cucumis sativus
Cucsa.005440 10.0kb downstream 10.0kb downstream 10000 false scaffold00055: 525310-535309 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315114 5265 Fabidae View MSA
124069296 5270 Rosid View MSA
123749712 5271 Pentapetalae View MSA
122796488 5272 Eudicot View MSA
122048773 5273 Angiosperm View MSA
121311104 5274 Embryophyte View MSA
123348449 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain