Gene : Cucsa.339080 C. sativus v1.0
Defline:  (1 of 4) PF04431 - Pectate lyase, N terminus (Pec_lyase_N) Genomic Order:  226
Name:  ? Cucsa.339080 Secondary Identifier:  ? PAC:16978831
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.339080 0.5kb upstream 0.5kb upstream 2046 true scaffold03356: 1822013-1824058 Cucumis sativus
Cucsa.339080 0.5kb upstream 0.5kb upstream 500 false scaffold03356: 1823559-1824058 Cucumis sativus
Cucsa.339080 0.5kb downstream 0.5kb downstream 2046 true scaffold03356: 1821513-1823558 Cucumis sativus
Cucsa.339080 0.5kb downstream 0.5kb downstream 500 false scaffold03356: 1821513-1822012 Cucumis sativus
Cucsa.339080 1.0kb upstream 1.0kb upstream 2546 true scaffold03356: 1822013-1824558 Cucumis sativus
Cucsa.339080 1.0kb upstream 1.0kb upstream 1000 false scaffold03356: 1823559-1824558 Cucumis sativus
Cucsa.339080 1.0kb downstream 1.0kb downstream 2546 true scaffold03356: 1821013-1823558 Cucumis sativus
Cucsa.339080 1.0kb downstream 1.0kb downstream 1000 false scaffold03356: 1821013-1822012 Cucumis sativus
Cucsa.339080 2.0kb upstream 2.0kb upstream 3546 true scaffold03356: 1822013-1825558 Cucumis sativus
Cucsa.339080 2.0kb upstream 2.0kb upstream 2000 false scaffold03356: 1823559-1825558 Cucumis sativus
Cucsa.339080 2.0kb downstream 2.0kb downstream 3546 true scaffold03356: 1820013-1823558 Cucumis sativus
Cucsa.339080 2.0kb downstream 2.0kb downstream 2000 false scaffold03356: 1820013-1822012 Cucumis sativus
Cucsa.339080 5.0kb upstream 5.0kb upstream 6546 true scaffold03356: 1822013-1828558 Cucumis sativus
Cucsa.339080 5.0kb upstream 5.0kb upstream 5000 false scaffold03356: 1823559-1828558 Cucumis sativus
Cucsa.339080 5.0kb downstream 5.0kb downstream 6546 true scaffold03356: 1817013-1823558 Cucumis sativus
Cucsa.339080 5.0kb downstream 5.0kb downstream 5000 false scaffold03356: 1817013-1822012 Cucumis sativus
Cucsa.339080 10.0kb upstream 10.0kb upstream 11546 true scaffold03356: 1822013-1833558 Cucumis sativus
Cucsa.339080 10.0kb upstream 10.0kb upstream 10000 false scaffold03356: 1823559-1833558 Cucumis sativus
Cucsa.339080 10.0kb downstream 10.0kb downstream 11546 true scaffold03356: 1812013-1823558 Cucumis sativus
Cucsa.339080 10.0kb downstream 10.0kb downstream 10000 false scaffold03356: 1812013-1822012 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315114 5265 Fabidae View MSA
124069296 5270 Rosid View MSA
123749712 5271 Pentapetalae View MSA
122796488 5272 Eudicot View MSA
122048773 5273 Angiosperm View MSA
121311104 5274 Embryophyte View MSA
123348449 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain