Gene : Bostr.26675s0149 B. stricta v1.2
Defline:  (1 of 5) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  149
Name:  ? Bostr.26675s0149 Secondary Identifier:  ? PAC:30668284
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta TRNA-CHARGING-PWY Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.26675s0149 0.5kb upstream 0.5kb upstream 7958 true Scaffold26675: 864598-872555 Boechera stricta
Bostr.26675s0149 0.5kb upstream 0.5kb upstream 500 false Scaffold26675: 864598-865097 Boechera stricta
Bostr.26675s0149 0.5kb downstream 0.5kb downstream 7958 true Scaffold26675: 865098-873055 Boechera stricta
Bostr.26675s0149 0.5kb downstream 0.5kb downstream 500 false Scaffold26675: 872556-873055 Boechera stricta
Bostr.26675s0149 1.0kb upstream 1.0kb upstream 8458 true Scaffold26675: 864098-872555 Boechera stricta
Bostr.26675s0149 1.0kb upstream 1.0kb upstream 1000 false Scaffold26675: 864098-865097 Boechera stricta
Bostr.26675s0149 1.0kb downstream 1.0kb downstream 8458 true Scaffold26675: 865098-873555 Boechera stricta
Bostr.26675s0149 1.0kb downstream 1.0kb downstream 1000 false Scaffold26675: 872556-873555 Boechera stricta
Bostr.26675s0149 2.0kb upstream 2.0kb upstream 9458 true Scaffold26675: 863098-872555 Boechera stricta
Bostr.26675s0149 2.0kb upstream 2.0kb upstream 2000 false Scaffold26675: 863098-865097 Boechera stricta
Bostr.26675s0149 2.0kb downstream 2.0kb downstream 9458 true Scaffold26675: 865098-874555 Boechera stricta
Bostr.26675s0149 2.0kb downstream 2.0kb downstream 2000 false Scaffold26675: 872556-874555 Boechera stricta
Bostr.26675s0149 5.0kb upstream 5.0kb upstream 12458 true Scaffold26675: 860098-872555 Boechera stricta
Bostr.26675s0149 5.0kb upstream 5.0kb upstream 5000 false Scaffold26675: 860098-865097 Boechera stricta
Bostr.26675s0149 5.0kb downstream 5.0kb downstream 12458 true Scaffold26675: 865098-877555 Boechera stricta
Bostr.26675s0149 5.0kb downstream 5.0kb downstream 5000 false Scaffold26675: 872556-877555 Boechera stricta
Bostr.26675s0149 10.0kb upstream 10.0kb upstream 17458 true Scaffold26675: 855098-872555 Boechera stricta
Bostr.26675s0149 10.0kb upstream 10.0kb upstream 10000 false Scaffold26675: 855098-865097 Boechera stricta
Bostr.26675s0149 10.0kb downstream 10.0kb downstream 17458 true Scaffold26675: 865098-882555 Boechera stricta
Bostr.26675s0149 10.0kb downstream 10.0kb downstream 10000 false Scaffold26675: 872556-882555 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain