Gene : Brara.F00320 B. rapa FPsc v1.3
Defline:  (1 of 5) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  320
Name:  ? Brara.F00320 Secondary Identifier:  ? PAC:30630454
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F00320 0.5kb upstream 0.5kb upstream 7602 true A06: 1874611-1882212 Brassica rapa FPsc
Brara.F00320 0.5kb upstream 0.5kb upstream 500 false A06: 1874611-1875110 Brassica rapa FPsc
Brara.F00320 0.5kb downstream 0.5kb downstream 7602 true A06: 1875111-1882712 Brassica rapa FPsc
Brara.F00320 0.5kb downstream 0.5kb downstream 500 false A06: 1882213-1882712 Brassica rapa FPsc
Brara.F00320 1.0kb upstream 1.0kb upstream 8102 true A06: 1874111-1882212 Brassica rapa FPsc
Brara.F00320 1.0kb upstream 1.0kb upstream 1000 false A06: 1874111-1875110 Brassica rapa FPsc
Brara.F00320 1.0kb downstream 1.0kb downstream 8102 true A06: 1875111-1883212 Brassica rapa FPsc
Brara.F00320 1.0kb downstream 1.0kb downstream 1000 false A06: 1882213-1883212 Brassica rapa FPsc
Brara.F00320 2.0kb upstream 2.0kb upstream 9102 true A06: 1873111-1882212 Brassica rapa FPsc
Brara.F00320 2.0kb upstream 2.0kb upstream 2000 false A06: 1873111-1875110 Brassica rapa FPsc
Brara.F00320 2.0kb downstream 2.0kb downstream 9102 true A06: 1875111-1884212 Brassica rapa FPsc
Brara.F00320 2.0kb downstream 2.0kb downstream 2000 false A06: 1882213-1884212 Brassica rapa FPsc
Brara.F00320 5.0kb upstream 5.0kb upstream 12102 true A06: 1870111-1882212 Brassica rapa FPsc
Brara.F00320 5.0kb upstream 5.0kb upstream 5000 false A06: 1870111-1875110 Brassica rapa FPsc
Brara.F00320 5.0kb downstream 5.0kb downstream 12102 true A06: 1875111-1887212 Brassica rapa FPsc
Brara.F00320 5.0kb downstream 5.0kb downstream 5000 false A06: 1882213-1887212 Brassica rapa FPsc
Brara.F00320 10.0kb upstream 10.0kb upstream 17102 true A06: 1865111-1882212 Brassica rapa FPsc
Brara.F00320 10.0kb upstream 10.0kb upstream 10000 false A06: 1865111-1875110 Brassica rapa FPsc
Brara.F00320 10.0kb downstream 10.0kb downstream 17102 true A06: 1875111-1892212 Brassica rapa FPsc
Brara.F00320 10.0kb downstream 10.0kb downstream 10000 false A06: 1882213-1892212 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier