Gene : Brara.C02998 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR11863:SF33 - LATHOSTEROL OXIDASE Genomic Order:  2998
Name:  ? Brara.C02998 Secondary Identifier:  ? PAC:30615483
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C02998 0.5kb upstream 0.5kb upstream 2275 true A03: 15286558-15288832 Brassica rapa FPsc
Brara.C02998 0.5kb upstream 0.5kb upstream 500 false A03: 15286558-15287057 Brassica rapa FPsc
Brara.C02998 0.5kb downstream 0.5kb downstream 2275 true A03: 15287058-15289332 Brassica rapa FPsc
Brara.C02998 0.5kb downstream 0.5kb downstream 500 false A03: 15288833-15289332 Brassica rapa FPsc
Brara.C02998 1.0kb upstream 1.0kb upstream 2775 true A03: 15286058-15288832 Brassica rapa FPsc
Brara.C02998 1.0kb upstream 1.0kb upstream 1000 false A03: 15286058-15287057 Brassica rapa FPsc
Brara.C02998 1.0kb downstream 1.0kb downstream 2775 true A03: 15287058-15289832 Brassica rapa FPsc
Brara.C02998 1.0kb downstream 1.0kb downstream 1000 false A03: 15288833-15289832 Brassica rapa FPsc
Brara.C02998 2.0kb upstream 2.0kb upstream 3775 true A03: 15285058-15288832 Brassica rapa FPsc
Brara.C02998 2.0kb upstream 2.0kb upstream 2000 false A03: 15285058-15287057 Brassica rapa FPsc
Brara.C02998 2.0kb downstream 2.0kb downstream 3775 true A03: 15287058-15290832 Brassica rapa FPsc
Brara.C02998 2.0kb downstream 2.0kb downstream 2000 false A03: 15288833-15290832 Brassica rapa FPsc
Brara.C02998 5.0kb upstream 5.0kb upstream 6775 true A03: 15282058-15288832 Brassica rapa FPsc
Brara.C02998 5.0kb upstream 5.0kb upstream 5000 false A03: 15282058-15287057 Brassica rapa FPsc
Brara.C02998 5.0kb downstream 5.0kb downstream 6775 true A03: 15287058-15293832 Brassica rapa FPsc
Brara.C02998 5.0kb downstream 5.0kb downstream 5000 false A03: 15288833-15293832 Brassica rapa FPsc
Brara.C02998 10.0kb upstream 10.0kb upstream 11775 true A03: 15277058-15288832 Brassica rapa FPsc
Brara.C02998 10.0kb upstream 10.0kb upstream 10000 false A03: 15277058-15287057 Brassica rapa FPsc
Brara.C02998 10.0kb downstream 10.0kb downstream 11775 true A03: 15287058-15298832 Brassica rapa FPsc
Brara.C02998 10.0kb downstream 10.0kb downstream 10000 false A03: 15288833-15298832 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121504143 5273 Angiosperm Singleton cluster - no MSA
122346947 5261 Brassicaceae Singleton cluster - no MSA
123786556 5264 Brassicales-Malvales Singleton cluster - no MSA
124284658 5266 SBM Singleton cluster - no MSA
124138827 5268 Malvidae Singleton cluster - no MSA
123866318 5270 Rosid Singleton cluster - no MSA
123451356 5271 Pentapetalae Singleton cluster - no MSA
122486864 5272 Eudicot Singleton cluster - no MSA
120777406 5274 Embryophyte Singleton cluster - no MSA
123426408 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier