Gene : Brara.C02997 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR11863:SF33 - LATHOSTEROL OXIDASE Genomic Order:  2997
Name:  ? Brara.C02997 Secondary Identifier:  ? PAC:30615188
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C02997 0.5kb upstream 0.5kb upstream 1992 true A03: 15284903-15286894 Brassica rapa FPsc
Brara.C02997 0.5kb upstream 0.5kb upstream 500 false A03: 15284903-15285402 Brassica rapa FPsc
Brara.C02997 0.5kb downstream 0.5kb downstream 1992 true A03: 15285403-15287394 Brassica rapa FPsc
Brara.C02997 0.5kb downstream 0.5kb downstream 500 false A03: 15286895-15287394 Brassica rapa FPsc
Brara.C02997 1.0kb upstream 1.0kb upstream 2492 true A03: 15284403-15286894 Brassica rapa FPsc
Brara.C02997 1.0kb upstream 1.0kb upstream 1000 false A03: 15284403-15285402 Brassica rapa FPsc
Brara.C02997 1.0kb downstream 1.0kb downstream 2492 true A03: 15285403-15287894 Brassica rapa FPsc
Brara.C02997 1.0kb downstream 1.0kb downstream 1000 false A03: 15286895-15287894 Brassica rapa FPsc
Brara.C02997 2.0kb upstream 2.0kb upstream 3492 true A03: 15283403-15286894 Brassica rapa FPsc
Brara.C02997 2.0kb upstream 2.0kb upstream 2000 false A03: 15283403-15285402 Brassica rapa FPsc
Brara.C02997 2.0kb downstream 2.0kb downstream 3492 true A03: 15285403-15288894 Brassica rapa FPsc
Brara.C02997 2.0kb downstream 2.0kb downstream 2000 false A03: 15286895-15288894 Brassica rapa FPsc
Brara.C02997 5.0kb upstream 5.0kb upstream 6492 true A03: 15280403-15286894 Brassica rapa FPsc
Brara.C02997 5.0kb upstream 5.0kb upstream 5000 false A03: 15280403-15285402 Brassica rapa FPsc
Brara.C02997 5.0kb downstream 5.0kb downstream 6492 true A03: 15285403-15291894 Brassica rapa FPsc
Brara.C02997 5.0kb downstream 5.0kb downstream 5000 false A03: 15286895-15291894 Brassica rapa FPsc
Brara.C02997 10.0kb upstream 10.0kb upstream 11492 true A03: 15275403-15286894 Brassica rapa FPsc
Brara.C02997 10.0kb upstream 10.0kb upstream 10000 false A03: 15275403-15285402 Brassica rapa FPsc
Brara.C02997 10.0kb downstream 10.0kb downstream 11492 true A03: 15285403-15296894 Brassica rapa FPsc
Brara.C02997 10.0kb downstream 10.0kb downstream 10000 false A03: 15286895-15296894 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346876 5261 Brassicaceae Singleton cluster - no MSA
123786498 5264 Brassicales-Malvales Singleton cluster - no MSA
124284604 5266 SBM Singleton cluster - no MSA
124138788 5268 Malvidae Singleton cluster - no MSA
123866285 5270 Rosid Singleton cluster - no MSA
123451328 5271 Pentapetalae Singleton cluster - no MSA
122486837 5272 Eudicot Singleton cluster - no MSA
122046142 5273 Angiosperm View MSA
121347239 5274 Embryophyte View MSA
123426408 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier