Gene : Brara.K00383 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Genomic Order:  11
Name:  ? Brara.K00383 Secondary Identifier:  ? PAC:30614905
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ASPARTATE-DEG1-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ASPARTATESYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3001 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7115 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7117 Brassica rapa FPsc pathologic  
BrapaFPsc THRESYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00383 0.5kb upstream 0.5kb upstream 3166 true Scaffold16715: 54462-57627 Brassica rapa FPsc
Brara.K00383 0.5kb upstream 0.5kb upstream 500 false Scaffold16715: 54462-54961 Brassica rapa FPsc
Brara.K00383 0.5kb downstream 0.5kb downstream 3166 true Scaffold16715: 54962-58127 Brassica rapa FPsc
Brara.K00383 0.5kb downstream 0.5kb downstream 500 false Scaffold16715: 57628-58127 Brassica rapa FPsc
Brara.K00383 1.0kb upstream 1.0kb upstream 3666 true Scaffold16715: 53962-57627 Brassica rapa FPsc
Brara.K00383 1.0kb upstream 1.0kb upstream 1000 false Scaffold16715: 53962-54961 Brassica rapa FPsc
Brara.K00383 1.0kb downstream 1.0kb downstream 3666 true Scaffold16715: 54962-58627 Brassica rapa FPsc
Brara.K00383 1.0kb downstream 1.0kb downstream 1000 false Scaffold16715: 57628-58627 Brassica rapa FPsc
Brara.K00383 2.0kb upstream 2.0kb upstream 4666 true Scaffold16715: 52962-57627 Brassica rapa FPsc
Brara.K00383 2.0kb upstream 2.0kb upstream 2000 false Scaffold16715: 52962-54961 Brassica rapa FPsc
Brara.K00383 2.0kb downstream 2.0kb downstream 4666 true Scaffold16715: 54962-59627 Brassica rapa FPsc
Brara.K00383 2.0kb downstream 2.0kb downstream 2000 false Scaffold16715: 57628-59627 Brassica rapa FPsc
Brara.K00383 5.0kb upstream 5.0kb upstream 7666 true Scaffold16715: 49962-57627 Brassica rapa FPsc
Brara.K00383 5.0kb upstream 5.0kb upstream 5000 false Scaffold16715: 49962-54961 Brassica rapa FPsc
Brara.K00383 5.0kb downstream 5.0kb downstream 7666 true Scaffold16715: 54962-62627 Brassica rapa FPsc
Brara.K00383 5.0kb downstream 5.0kb downstream 5000 false Scaffold16715: 57628-62627 Brassica rapa FPsc
Brara.K00383 10.0kb upstream 10.0kb upstream 12666 true Scaffold16715: 44962-57627 Brassica rapa FPsc
Brara.K00383 10.0kb upstream 10.0kb upstream 10000 false Scaffold16715: 44962-54961 Brassica rapa FPsc
Brara.K00383 10.0kb downstream 10.0kb downstream 12666 true Scaffold16715: 54962-67627 Brassica rapa FPsc
Brara.K00383 10.0kb downstream 10.0kb downstream 10000 false Scaffold16715: 57628-67627 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376883 5261 Brassicaceae View MSA
123833369 5264 Brassicales-Malvales View MSA
124341327 5266 SBM View MSA
124241276 5268 Malvidae View MSA
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier