Gene : Brara.I05404 B. rapa FPsc v1.3
Defline:  (1 of 2) 1.13.11.27 - 4-hydroxyphenylpyruvate dioxygenase / p-hydroxyphenylpyruvate oxidase Genomic Order:  5404
Name:  ? Brara.I05404 Secondary Identifier:  ? PAC:30645437
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1422 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1581 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5864 Brassica rapa FPsc pathologic  
BrapaFPsc TYRFUMCAT-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05404 0.5kb upstream 0.5kb upstream 2055 true A09: 43706088-43708142 Brassica rapa FPsc
Brara.I05404 0.5kb upstream 0.5kb upstream 500 false A09: 43706088-43706587 Brassica rapa FPsc
Brara.I05404 0.5kb downstream 0.5kb downstream 2055 true A09: 43706588-43708642 Brassica rapa FPsc
Brara.I05404 0.5kb downstream 0.5kb downstream 500 false A09: 43708143-43708642 Brassica rapa FPsc
Brara.I05404 1.0kb upstream 1.0kb upstream 2555 true A09: 43705588-43708142 Brassica rapa FPsc
Brara.I05404 1.0kb upstream 1.0kb upstream 1000 false A09: 43705588-43706587 Brassica rapa FPsc
Brara.I05404 1.0kb downstream 1.0kb downstream 2555 true A09: 43706588-43709142 Brassica rapa FPsc
Brara.I05404 1.0kb downstream 1.0kb downstream 1000 false A09: 43708143-43709142 Brassica rapa FPsc
Brara.I05404 2.0kb upstream 2.0kb upstream 3555 true A09: 43704588-43708142 Brassica rapa FPsc
Brara.I05404 2.0kb upstream 2.0kb upstream 2000 false A09: 43704588-43706587 Brassica rapa FPsc
Brara.I05404 2.0kb downstream 2.0kb downstream 3555 true A09: 43706588-43710142 Brassica rapa FPsc
Brara.I05404 2.0kb downstream 2.0kb downstream 2000 false A09: 43708143-43710142 Brassica rapa FPsc
Brara.I05404 5.0kb upstream 5.0kb upstream 6555 true A09: 43701588-43708142 Brassica rapa FPsc
Brara.I05404 5.0kb upstream 5.0kb upstream 5000 false A09: 43701588-43706587 Brassica rapa FPsc
Brara.I05404 5.0kb downstream 5.0kb downstream 6555 true A09: 43706588-43713142 Brassica rapa FPsc
Brara.I05404 5.0kb downstream 5.0kb downstream 5000 false A09: 43708143-43713142 Brassica rapa FPsc
Brara.I05404 10.0kb upstream 10.0kb upstream 11555 true A09: 43696588-43708142 Brassica rapa FPsc
Brara.I05404 10.0kb upstream 10.0kb upstream 10000 false A09: 43696588-43706587 Brassica rapa FPsc
Brara.I05404 10.0kb downstream 10.0kb downstream 11555 true A09: 43706588-43718142 Brassica rapa FPsc
Brara.I05404 10.0kb downstream 10.0kb downstream 10000 false A09: 43708143-43718142 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026162 5273 Angiosperm View MSA
122360255 5261 Brassicaceae View MSA
123834164 5264 Brassicales-Malvales View MSA
124344611 5266 SBM View MSA
124251716 5268 Malvidae View MSA
124066218 5270 Rosid View MSA
123739234 5271 Pentapetalae View MSA
122787711 5272 Eudicot View MSA
121345001 5274 Embryophyte View MSA
123424419 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier