Gene : Brara.I04243 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.1.2.11 - 3-methyl-2-oxobutanoate hydroxymethyltransferase / Ketopantoate hydroxymethyltransferase Genomic Order:  4243
Name:  ? Brara.I04243 Secondary Identifier:  ? PAC:30644553
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PANTO-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I04243 0.5kb upstream 0.5kb upstream 2088 true A09: 37622223-37624310 Brassica rapa FPsc
Brara.I04243 0.5kb upstream 0.5kb upstream 500 false A09: 37623811-37624310 Brassica rapa FPsc
Brara.I04243 0.5kb downstream 0.5kb downstream 2088 true A09: 37621723-37623810 Brassica rapa FPsc
Brara.I04243 0.5kb downstream 0.5kb downstream 500 false A09: 37621723-37622222 Brassica rapa FPsc
Brara.I04243 1.0kb upstream 1.0kb upstream 2588 true A09: 37622223-37624810 Brassica rapa FPsc
Brara.I04243 1.0kb upstream 1.0kb upstream 1000 false A09: 37623811-37624810 Brassica rapa FPsc
Brara.I04243 1.0kb downstream 1.0kb downstream 2588 true A09: 37621223-37623810 Brassica rapa FPsc
Brara.I04243 1.0kb downstream 1.0kb downstream 1000 false A09: 37621223-37622222 Brassica rapa FPsc
Brara.I04243 2.0kb upstream 2.0kb upstream 3588 true A09: 37622223-37625810 Brassica rapa FPsc
Brara.I04243 2.0kb upstream 2.0kb upstream 2000 false A09: 37623811-37625810 Brassica rapa FPsc
Brara.I04243 2.0kb downstream 2.0kb downstream 3588 true A09: 37620223-37623810 Brassica rapa FPsc
Brara.I04243 2.0kb downstream 2.0kb downstream 2000 false A09: 37620223-37622222 Brassica rapa FPsc
Brara.I04243 5.0kb upstream 5.0kb upstream 6588 true A09: 37622223-37628810 Brassica rapa FPsc
Brara.I04243 5.0kb upstream 5.0kb upstream 5000 false A09: 37623811-37628810 Brassica rapa FPsc
Brara.I04243 5.0kb downstream 5.0kb downstream 6588 true A09: 37617223-37623810 Brassica rapa FPsc
Brara.I04243 5.0kb downstream 5.0kb downstream 5000 false A09: 37617223-37622222 Brassica rapa FPsc
Brara.I04243 10.0kb upstream 10.0kb upstream 11588 true A09: 37622223-37633810 Brassica rapa FPsc
Brara.I04243 10.0kb upstream 10.0kb upstream 10000 false A09: 37623811-37633810 Brassica rapa FPsc
Brara.I04243 10.0kb downstream 10.0kb downstream 11588 true A09: 37612223-37623810 Brassica rapa FPsc
Brara.I04243 10.0kb downstream 10.0kb downstream 10000 false A09: 37612223-37622222 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354175 5261 Brassicaceae Singleton cluster - no MSA
123840931 5264 Brassicales-Malvales View MSA
124337427 5266 SBM View MSA
124240313 5268 Malvidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier