Gene : Brara.A03878 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR11863:SF33 - LATHOSTEROL OXIDASE Genomic Order:  3878
Name:  ? Brara.A03878 Secondary Identifier:  ? PAC:30638898
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A03878 0.5kb upstream 0.5kb upstream 1928 true A01: 30594729-30596656 Brassica rapa FPsc
Brara.A03878 0.5kb upstream 0.5kb upstream 500 false A01: 30596157-30596656 Brassica rapa FPsc
Brara.A03878 0.5kb downstream 0.5kb downstream 1928 true A01: 30594229-30596156 Brassica rapa FPsc
Brara.A03878 0.5kb downstream 0.5kb downstream 500 false A01: 30594229-30594728 Brassica rapa FPsc
Brara.A03878 1.0kb upstream 1.0kb upstream 2428 true A01: 30594729-30597156 Brassica rapa FPsc
Brara.A03878 1.0kb upstream 1.0kb upstream 1000 false A01: 30596157-30597156 Brassica rapa FPsc
Brara.A03878 1.0kb downstream 1.0kb downstream 2428 true A01: 30593729-30596156 Brassica rapa FPsc
Brara.A03878 1.0kb downstream 1.0kb downstream 1000 false A01: 30593729-30594728 Brassica rapa FPsc
Brara.A03878 2.0kb upstream 2.0kb upstream 3428 true A01: 30594729-30598156 Brassica rapa FPsc
Brara.A03878 2.0kb upstream 2.0kb upstream 2000 false A01: 30596157-30598156 Brassica rapa FPsc
Brara.A03878 2.0kb downstream 2.0kb downstream 3428 true A01: 30592729-30596156 Brassica rapa FPsc
Brara.A03878 2.0kb downstream 2.0kb downstream 2000 false A01: 30592729-30594728 Brassica rapa FPsc
Brara.A03878 5.0kb upstream 5.0kb upstream 6428 true A01: 30594729-30601156 Brassica rapa FPsc
Brara.A03878 5.0kb upstream 5.0kb upstream 5000 false A01: 30596157-30601156 Brassica rapa FPsc
Brara.A03878 5.0kb downstream 5.0kb downstream 6428 true A01: 30589729-30596156 Brassica rapa FPsc
Brara.A03878 5.0kb downstream 5.0kb downstream 5000 false A01: 30589729-30594728 Brassica rapa FPsc
Brara.A03878 10.0kb upstream 10.0kb upstream 11428 true A01: 30594729-30606156 Brassica rapa FPsc
Brara.A03878 10.0kb upstream 10.0kb upstream 10000 false A01: 30596157-30606156 Brassica rapa FPsc
Brara.A03878 10.0kb downstream 10.0kb downstream 11428 true A01: 30584729-30596156 Brassica rapa FPsc
Brara.A03878 10.0kb downstream 10.0kb downstream 10000 false A01: 30584729-30594728 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380933 5261 Brassicaceae View MSA
123833662 5264 Brassicales-Malvales View MSA
124343580 5266 SBM View MSA
124244267 5268 Malvidae View MSA
124064501 5270 Rosid View MSA
123737872 5271 Pentapetalae View MSA
122793371 5272 Eudicot View MSA
122046142 5273 Angiosperm View MSA
121347239 5274 Embryophyte View MSA
123426408 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier