Protein Domain : IPR011539

Type:  Domain Name:  Rel homology domain (RHD), DNA-binding domain
Description:  The Rel homology domain (RHD) is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish, NFAT, among others. The RHD is composed of two structural domains: the N-terminal DNA binding domain that is similar to that found in P53, the C-terminal domain has an immunoglobulin-like fold (See ) that functions as a dimerisation domain. This entry represents the N-terminal DNA binding domain []. Some of these transcription factors appear to form multi-protein DNA-bound complexes []. Phosphorylation of the RHD appears to play a role in the regulation of some of these transcription factors, acting to modulate the expression of their target genes []. The RHD is composed of two immunoglobulin-like beta-barrel subdomains that grip the DNA in the major groove. The N-terminal specificity domain resembles the core domain of the p53 transcription factor, and contains a recognition loop that interacts with DNA bases; the C-terminal dimerisation domain contains the site for interaction with I-kappaB []. Short Name:  RHD_DNA_bind_dom

0 Child Features

0 Contains

3 Cross Referencess

Identifier
PF00554
PS50254
G3DSA:2.60.40.340

5 Found Ins

DB identifier Type Name
IPR008366 Family Nuclear factor of activated T cells (NFAT)
IPR015646 Family Nuclear factor of activated T-cells 5
IPR015647 Family Nuclear factor of activated T-cells 1
IPR000451 Family NF-kappa-B/Dorsal
IPR011363 Family Dorsal/Dif protein

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR011539
GO:0003700 IPR011539
GO:0006355 IPR011539

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR011539
GO:0003700 IPR011539
GO:0006355 IPR011539

1 Parent Features

DB identifier Type Name
IPR008967 Domain p53-like transcription factor, DNA-binding

184 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
29844.m003167 B9RTE7 PAC:16810875 Ricinus communis 234  
orange1.1g021641m A0A067H3D8 PAC:18137739 Citrus sinensis 309  
orange1.1g022872m A0A067H3T5 PAC:18137740 Citrus sinensis 291  
Potri.003G043800.1 A0A2K2B1E2 PAC:26996291 Populus trichocarpa 151  
Potri.011G053700.1 A0A2K1YFX7 PAC:27002032 Populus trichocarpa 277  
Araha.24198s0004.1.p PAC:28838104 Arabidopsis halleri 248  
Cagra.4395s0019.1.p PAC:28898490 Capsella grandiflora 624  
Glyma.14G172200.1.p K7M7L0 PAC:30531714 Glycine max 429  
Brara.K00739.1.p A0A397L765 PAC:30614536 Brassica rapa FPsc 343  
Bostr.26833s0893.1.p PAC:30653358 Boechera stricta 246  
Medtr8g017100.1 G7LHF9 PAC:31073532 Medicago truncatula 202  
Medtr8g014240.1 G7LGM2 PAC:31072796 Medicago truncatula 148  
SapurV1A.0042s0130.2.p PAC:31398014 Salix purpurea 263  
SapurV1A.0042s0130.1.p PAC:31398013 Salix purpurea 285  
SapurV1A.0041s0350.1.p PAC:31438304 Salix purpurea 352  
Traes_4BL_404D7F80D.2 PAC:31922552 Triticum aestivum 273  
Prupe.4G270600.1.p M5WMG6 PAC:32094948 Prunus persica 117  
GSMUA_Achr6P04750_001 PAC:32320516 Musa acuminata 383  
Seita.1G239900.1.p A0A368PP35 PAC:32694902 Setaria italica 148  
Aco007029.1 PAC:33048067 Ananas comosus 362  
Aco010531.1 PAC:33049571 Ananas comosus 354  
Zosma305g00010.1 A0A0K9PA18 PAC:33172048 Zostera marina 186  
Zosma425g00020.1 A0A0K9P2D2 PAC:33177561 Zostera marina 155  
Zosma44g00640.1 A0A0K9P120 PAC:33173241 Zostera marina 899  
AL7G12380.t1 PAC:35936780 Arabidopsis lyrata 299  
Tp57577_TGAC_v2_mRNA11870 PAC:35955754 Trifolium pratense 68  
Tp57577_TGAC_v2_mRNA21732 PAC:35981059 Trifolium pratense 222  
Tp57577_TGAC_v2_mRNA38550 PAC:35989103 Trifolium pratense 277  
Oropetium_20150105_25839A PAC:36006035 Oropetium thomaeum 272  
DCAR_021944 PAC:36081910 Daucus carota 181  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7830764
            9794820
            15516339
            17869269