Protein Domain : IPR016438

Type:  Family Name:  ATP-dependent RNA helicase Ski2
Description:  This group represents a group of ATP-dependent RNA helicases and their homologues, including Ski complex protein Ski2 and RNA helicase Mtr4 (also known as Dob1). Ski2 is a putative RNA helicase that forms ski complex, which participates in many cytoplasmic pathways of the exosome in both yeast and metazoan cells, including 3'-to-5' mRNA turnover []. Mtr4 is a ATP-dependent 3'-5' RNA helicase involved in nuclear RNA processing and degradation [, ]. This entry also includes Arabidopsis AtMTR4 (AT1G59760) and HEN2 (AT2G06990), which target specific subsets of nuclear transcripts for degradation by the nuclear exosome []. Short Name:  Ski2
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0 Child Features

3 Contains

DB identifier Type Name
IPR001650 Domain Helicase, C-terminal
IPR011545 Domain DEAD/DEAH box helicase domain
IPR012961 Domain ATP-dependent RNA helicase Ski2, C-terminal

1 Cross References

Identifier
PIRSF005198

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003723 IPR016438
GO:0003724 IPR016438
GO:0006401 IPR016438

3 Ontology Annotations

GO Term Gene Name
GO:0003723 IPR016438
GO:0003724 IPR016438
GO:0006401 IPR016438

0 Parent Features

806 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
29702.m000175 B9SZG8 PAC:16806160 Ricinus communis 962  
Potri.009G041200.4 PAC:26988489 Populus trichocarpa 794  
Potri.006G078000.3 PAC:27006593 Populus trichocarpa 744  
Potri.018G146000.1 PAC:27010225 Populus trichocarpa 933  
Gorai.003G125100.3 A0A0D2MGR2 PAC:26799085 Gossypium raimondii 1045  
Gorai.013G211300.2 A0A0D2VIA5 PAC:26789068 Gossypium raimondii 737  
Gorai.010G175700.2 A0A0D2SUQ8 PAC:26760032 Gossypium raimondii 880  
Thecc1EG039723t3 A0A061GRQ7 PAC:27425651 Theobroma cacao 741  
Migut.N00862.3.p PAC:28926357 Mimulus guttatus 743  
Cagra.8195s0001.1.p PAC:28908014 Capsella grandiflora 763  
Glyma.08G027700.2.p A0A0R0IFZ8 PAC:30537209 Glycine max 911  
Spipo12G0063100 PAC:31503361 Spirodela polyrhiza 1005  
Traes_2AS_686B7CF9A.2 PAC:31744703 Triticum aestivum 878  
Traes_2BS_086313054.2 PAC:32025878 Triticum aestivum 878  
Traes_2BS_086313054.3 PAC:32025877 Triticum aestivum 878  
Traes_4DS_665ECA8D8.3 PAC:31933325 Triticum aestivum 916  
Traes_6DS_7ECADBFD1.5 PAC:31972904 Triticum aestivum 1008  
Prupe.6G062900.3.p A0A251NL08 PAC:32086620 Prunus persica 1274  
Prupe.1G065000.5.p A0A251QTH2 PAC:32120567 Prunus persica 957  
Prupe.1G065000.4.p A0A251QTH2 PAC:32120566 Prunus persica 957  
Kalax.0136s0051.1.p PAC:32564670 Kalanchoe laxiflora 1382  
Kalax.0493s0025.1.p PAC:32555984 Kalanchoe laxiflora 1242  
LOC_Os11g07500.2 PAC:33162498 Oryza sativa 970  
AUR62020712-RA PAC:36283082 Chenopodium quinoa 889  
AUR62028012-RA PAC:36322495 Chenopodium quinoa 979  
AUR62001703-RA PAC:36313736 Chenopodium quinoa 1351  
AUR62032457-RA PAC:36303626 Chenopodium quinoa 987  
AUR62041131-RA PAC:36300888 Chenopodium quinoa 898  
Phvul.002G303000.3.p PAC:37175862 Phaseolus vulgaris 925  
Phvul.002G303000.4.p PAC:37175863 Phaseolus vulgaris 923  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            23953113
            22532666
            25144737
            21855801