Protein Domain : IPR000119

Type:  Family Name:  Histone-like DNA-binding protein
Description:  Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coliis a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) [].The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as adimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. Short Name:  Hist_DNA-bd

3 Child Features

DB identifier Type Name
IPR005685 Family Integration host factor, beta subunit
IPR005684 Family Integration host factor, alpha subunit
IPR005902 Family Putative DNA-binding protein, HU-related

1 Contains

DB identifier Type Name
IPR020816 Conserved_site Histone-like DNA-binding protein, conserved site

3 Cross Referencess

Identifier
PF00216
PR01727
SM00411

0 Found In

1 GO Annotation

GO Term Gene Name
GO:0003677 IPR000119

1 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR000119

0 Parent Features

66 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
31751.m000018 B9TIP0 PAC:16825177 Ricinus communis 92  
33452.m000023 B9TIM6 PAC:16825843 Ricinus communis 101  
38705.m000029 PAC:16827133 Ricinus communis 168  
27935.m000041 B9TBN1 PAC:16799540 Ricinus communis 93  
27675.m000084 B9T981 PAC:16798941 Ricinus communis 348  
122204 C1MI10 PAC:27345301 Micromonas pusilla CCMP1545 132  
59967 C1EA69 PAC:27404405 Micromonas sp RCC299 118  
26223 A4S3Z3 PAC:27416045 Ostreococcus lucimarinus 115  
Araha.11756s0288.1.p PAC:28856592 Arabidopsis halleri 90  
Cre06.g285401.t1.1 A0A2K3DPX1 PAC:30779990 Chlamydomonas reinhardtii 178  
Brdisv1pangenome1000630m.p PAC:33621142 Brachypodium distachyon Pangenome 90  
Brdisv1pangenome1005560m.p PAC:33623193 Brachypodium distachyon Pangenome 95  
Brdisv1pangenome1006388m.p PAC:33655874 Brachypodium distachyon Pangenome 91  
Brdisv1pangenome1006496m.p PAC:33624386 Brachypodium distachyon Pangenome 91  
Brdisv1pangenome1006528m.p PAC:33658561 Brachypodium distachyon Pangenome 94  
Brdisv1pangenome1006657m.p PAC:33621564 Brachypodium distachyon Pangenome 91  
Brdisv1pangenome1006154m.p PAC:33621375 Brachypodium distachyon Pangenome 92  
Brdisv1pangenome1007353m.p PAC:33635418 Brachypodium distachyon Pangenome 90  
Brdisv1pangenome1007528m.p PAC:33621418 Brachypodium distachyon Pangenome 91  
Brdisv1pangenome1006764m.p PAC:33655666 Brachypodium distachyon Pangenome 95  
Brdisv1pangenome1007063m.p PAC:33656093 Brachypodium distachyon Pangenome 92  
Brdisv1pangenome1007844m.p PAC:33656695 Brachypodium distachyon Pangenome 101  
Brdisv1pangenome1009220m.p PAC:33656433 Brachypodium distachyon Pangenome 95  
Brdisv1pangenome1008833m.p PAC:33655558 Brachypodium distachyon Pangenome 91  
Brdisv1pangenome1008968m.p PAC:33624106 Brachypodium distachyon Pangenome 92  
Brdisv1pangenome1009715m.p PAC:33655606 Brachypodium distachyon Pangenome 98  
Brdisv1pangenome1009734m.p PAC:33656150 Brachypodium distachyon Pangenome 96  
Brdisv1pangenome1010857m.p PAC:33620365 Brachypodium distachyon Pangenome 98  
Brdisv1pangenome1011043m.p PAC:33623095 Brachypodium distachyon Pangenome 91  
Brdisv1pangenome1011100m.p PAC:33622786 Brachypodium distachyon Pangenome 89  

6 Publications

First Author Title Year Journal Volume Pages PubMed ID
            2972385
            3047111
            3118156
            6540370
            8464748
            1961745