Gene : Glyma.U040100 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG0319 - WD40-repeat-containing subunit of the 18S rRNA processing complex Genomic Order:  1
Name:  ? Glyma.U040100 Secondary Identifier:  ? PAC:30554307
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U040100 0.5kb upstream 0.5kb upstream 6292 true scaffold_581: 338-6629 Glycine max
Glyma.U040100 0.5kb upstream 0.5kb upstream 500 false scaffold_581: 6130-6629 Glycine max
Glyma.U040100 0.5kb downstream 0.5kb downstream 6129 true scaffold_581: 1-6129 Glycine max
Glyma.U040100 0.5kb downstream 0.5kb downstream 337 false scaffold_581: 1-337 Glycine max
Glyma.U040100 1.0kb upstream 1.0kb upstream 6792 true scaffold_581: 338-7129 Glycine max
Glyma.U040100 1.0kb upstream 1.0kb upstream 1000 false scaffold_581: 6130-7129 Glycine max
Glyma.U040100 1.0kb downstream 1.0kb downstream 6129 true scaffold_581: 1-6129 Glycine max
Glyma.U040100 1.0kb downstream 1.0kb downstream 337 false scaffold_581: 1-337 Glycine max
Glyma.U040100 2.0kb upstream 2.0kb upstream 7792 true scaffold_581: 338-8129 Glycine max
Glyma.U040100 2.0kb upstream 2.0kb upstream 2000 false scaffold_581: 6130-8129 Glycine max
Glyma.U040100 2.0kb downstream 2.0kb downstream 6129 true scaffold_581: 1-6129 Glycine max
Glyma.U040100 2.0kb downstream 2.0kb downstream 337 false scaffold_581: 1-337 Glycine max
Glyma.U040100 5.0kb upstream 5.0kb upstream 9653 true scaffold_581: 338-9990 Glycine max
Glyma.U040100 5.0kb upstream 5.0kb upstream 3861 false scaffold_581: 6130-9990 Glycine max
Glyma.U040100 5.0kb downstream 5.0kb downstream 6129 true scaffold_581: 1-6129 Glycine max
Glyma.U040100 5.0kb downstream 5.0kb downstream 337 false scaffold_581: 1-337 Glycine max
Glyma.U040100 10.0kb upstream 10.0kb upstream 9653 true scaffold_581: 338-9990 Glycine max
Glyma.U040100 10.0kb upstream 10.0kb upstream 3861 false scaffold_581: 6130-9990 Glycine max
Glyma.U040100 10.0kb downstream 10.0kb downstream 6129 true scaffold_581: 1-6129 Glycine max
Glyma.U040100 10.0kb downstream 10.0kb downstream 337 false scaffold_581: 1-337 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121610652 5273 Angiosperm Singleton cluster - no MSA
122243417 5265 Fabidae Singleton cluster - no MSA
123987936 5270 Rosid Singleton cluster - no MSA
123563164 5271 Pentapetalae Singleton cluster - no MSA
122597944 5272 Eudicot Singleton cluster - no MSA
120882891 5274 Embryophyte Singleton cluster - no MSA
122923725 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.986248 0.0 5.89971    
cufflinks 0.535125 0.0 3.42135    
cufflinks 0.546361 0.0 3.4677    
cufflinks 1.10974 0.0 6.42685    
cufflinks 1.1135 0.0 6.53635    
cufflinks 0.371933 0.0 2.50795   Low
cufflinks 1.27103 0.0 7.33404   High
cufflinks 0.769101 0.0 4.70355    
cufflinks 0.867266 0.0 5.29409    
cufflinks 0.018     Low  
cufflinks 0.017     Low  
cufflinks 0.035     Low  
cufflinks 0.053     Low High
cufflinks 0.065     Low High
cufflinks 0.018     Low  
cufflinks 0.02     Low  
cufflinks 0.01     Low Low
cufflinks 0.019     Low  
cufflinks 0.03     Low  
cufflinks 0.03     Low  
cufflinks 0.017     Low  
cufflinks 0.023     Low  
cufflinks 0.016     Low  
cufflinks 0.009     Low Low
cufflinks 0.035     Low  
cufflinks 0.017     Low  

0 Strain