Gene : Glyma.U019500 G. max Wm82.a2.v1
Defline:  (1 of 5) PF04194 - Programmed cell death protein 2, C-terminal putative domain (PDCD2_C) Genomic Order:  104
Name:  ? Glyma.U019500 Secondary Identifier:  ? PAC:30535362
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U019500 0.5kb upstream 0.5kb upstream 2782 true scaffold_21: 3237513-3240294 Glycine max
Glyma.U019500 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 3237513-3238012 Glycine max
Glyma.U019500 0.5kb downstream 0.5kb downstream 2782 true scaffold_21: 3238013-3240794 Glycine max
Glyma.U019500 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 3240295-3240794 Glycine max
Glyma.U019500 1.0kb upstream 1.0kb upstream 3282 true scaffold_21: 3237013-3240294 Glycine max
Glyma.U019500 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 3237013-3238012 Glycine max
Glyma.U019500 1.0kb downstream 1.0kb downstream 3282 true scaffold_21: 3238013-3241294 Glycine max
Glyma.U019500 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 3240295-3241294 Glycine max
Glyma.U019500 2.0kb upstream 2.0kb upstream 4282 true scaffold_21: 3236013-3240294 Glycine max
Glyma.U019500 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 3236013-3238012 Glycine max
Glyma.U019500 2.0kb downstream 2.0kb downstream 4282 true scaffold_21: 3238013-3242294 Glycine max
Glyma.U019500 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 3240295-3242294 Glycine max
Glyma.U019500 5.0kb upstream 5.0kb upstream 7282 true scaffold_21: 3233013-3240294 Glycine max
Glyma.U019500 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 3233013-3238012 Glycine max
Glyma.U019500 5.0kb downstream 5.0kb downstream 7282 true scaffold_21: 3238013-3245294 Glycine max
Glyma.U019500 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 3240295-3245294 Glycine max
Glyma.U019500 10.0kb upstream 10.0kb upstream 12282 true scaffold_21: 3228013-3240294 Glycine max
Glyma.U019500 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 3228013-3238012 Glycine max
Glyma.U019500 10.0kb downstream 10.0kb downstream 12282 true scaffold_21: 3238013-3250294 Glycine max
Glyma.U019500 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 3240295-3250294 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121608680 5273 Angiosperm Singleton cluster - no MSA
122240587 5265 Fabidae Singleton cluster - no MSA
123985616 5270 Rosid Singleton cluster - no MSA
123561025 5271 Pentapetalae Singleton cluster - no MSA
122595819 5272 Eudicot Singleton cluster - no MSA
120880945 5274 Embryophyte Singleton cluster - no MSA
122921801 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.133519 0.0 0.556728 Low  
cufflinks 0.143385 0.0 0.579556 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.513403 0.0 2.54078   High
cufflinks 0.129603 0.0 0.540895 Low  
cufflinks 0.166339 0.0 0.682706 Low  
cufflinks 0.484724 0.0 2.39795   High
cufflinks 0.0427949 0.0 0.204643 Low Low
cufflinks 0.180266 0.0 0.724327 Low  
cufflinks 0.016     Low  
cufflinks 0.005     Low Low
cufflinks 0.041     Low  
cufflinks 0.011     Low Low
cufflinks 0.08       High
cufflinks 0.057        
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.033     Low  
cufflinks 0.063     Low  
cufflinks 0.012     Low  
cufflinks 0.043     Low  
cufflinks 0.054     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.006     Low Low

0 Strain