Gene : Glyma.U028500 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1
Name:  ? Glyma.U028500 Secondary Identifier:  ? PAC:30541453
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U028500 0.5kb upstream 0.5kb upstream 10264 true scaffold_271: 778-11041 Glycine max
Glyma.U028500 0.5kb upstream 0.5kb upstream 500 false scaffold_271: 10542-11041 Glycine max
Glyma.U028500 0.5kb downstream 0.5kb downstream 10264 true scaffold_271: 278-10541 Glycine max
Glyma.U028500 0.5kb downstream 0.5kb downstream 500 false scaffold_271: 278-777 Glycine max
Glyma.U028500 1.0kb upstream 1.0kb upstream 10764 true scaffold_271: 778-11541 Glycine max
Glyma.U028500 1.0kb upstream 1.0kb upstream 1000 false scaffold_271: 10542-11541 Glycine max
Glyma.U028500 1.0kb downstream 1.0kb downstream 10541 true scaffold_271: 1-10541 Glycine max
Glyma.U028500 1.0kb downstream 1.0kb downstream 777 false scaffold_271: 1-777 Glycine max
Glyma.U028500 2.0kb upstream 2.0kb upstream 11764 true scaffold_271: 778-12541 Glycine max
Glyma.U028500 2.0kb upstream 2.0kb upstream 2000 false scaffold_271: 10542-12541 Glycine max
Glyma.U028500 2.0kb downstream 2.0kb downstream 10541 true scaffold_271: 1-10541 Glycine max
Glyma.U028500 2.0kb downstream 2.0kb downstream 777 false scaffold_271: 1-777 Glycine max
Glyma.U028500 5.0kb upstream 5.0kb upstream 14764 true scaffold_271: 778-15541 Glycine max
Glyma.U028500 5.0kb upstream 5.0kb upstream 5000 false scaffold_271: 10542-15541 Glycine max
Glyma.U028500 5.0kb downstream 5.0kb downstream 10541 true scaffold_271: 1-10541 Glycine max
Glyma.U028500 5.0kb downstream 5.0kb downstream 777 false scaffold_271: 1-777 Glycine max
Glyma.U028500 10.0kb upstream 10.0kb upstream 15460 true scaffold_271: 778-16237 Glycine max
Glyma.U028500 10.0kb upstream 10.0kb upstream 5696 false scaffold_271: 10542-16237 Glycine max
Glyma.U028500 10.0kb downstream 10.0kb downstream 10541 true scaffold_271: 1-10541 Glycine max
Glyma.U028500 10.0kb downstream 10.0kb downstream 777 false scaffold_271: 1-777 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306882 5265 Fabidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0553172 0.0 0.225352 Low  
cufflinks 0.0667627 0.0 0.26957 Low  
cufflinks 0.0845116 0.0 0.337633 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.31238E-4 0.0 0.00275529 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0350594 0.0 0.146755 Low  
cufflinks 0.011     Low  
cufflinks 0.004     Low Low
cufflinks 0.028     Low  
cufflinks 0.011     Low  
cufflinks 0.056     Low  
cufflinks 0.06        
cufflinks 0.104       High
cufflinks 0.003     Low Low
cufflinks 0.077     Low High
cufflinks 0.018     Low  
cufflinks 0.085     Low High
cufflinks 0.009     Low  
cufflinks 0.041     Low  
cufflinks 0.068     Low  
cufflinks 0.01     Low  
cufflinks 0.043     Low  
cufflinks 0.012     Low  

0 Strain