Gene : Glyma.20G244900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12741:SF12 - CALLOSE SYNTHASE 9 Genomic Order:  2449
Name:  ? Glyma.20G244900 Secondary Identifier:  ? PAC:30522670
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6773 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G244900 0.5kb upstream 0.5kb upstream 59139 true Chr20: 47494163-47553301 Glycine max
Glyma.20G244900 0.5kb upstream 0.5kb upstream 500 false Chr20: 47494163-47494662 Glycine max
Glyma.20G244900 0.5kb downstream 0.5kb downstream 59139 true Chr20: 47494663-47553801 Glycine max
Glyma.20G244900 0.5kb downstream 0.5kb downstream 500 false Chr20: 47553302-47553801 Glycine max
Glyma.20G244900 1.0kb upstream 1.0kb upstream 59639 true Chr20: 47493663-47553301 Glycine max
Glyma.20G244900 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47493663-47494662 Glycine max
Glyma.20G244900 1.0kb downstream 1.0kb downstream 59639 true Chr20: 47494663-47554301 Glycine max
Glyma.20G244900 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47553302-47554301 Glycine max
Glyma.20G244900 2.0kb upstream 2.0kb upstream 60639 true Chr20: 47492663-47553301 Glycine max
Glyma.20G244900 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47492663-47494662 Glycine max
Glyma.20G244900 2.0kb downstream 2.0kb downstream 60639 true Chr20: 47494663-47555301 Glycine max
Glyma.20G244900 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47553302-47555301 Glycine max
Glyma.20G244900 5.0kb upstream 5.0kb upstream 63639 true Chr20: 47489663-47553301 Glycine max
Glyma.20G244900 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47489663-47494662 Glycine max
Glyma.20G244900 5.0kb downstream 5.0kb downstream 63639 true Chr20: 47494663-47558301 Glycine max
Glyma.20G244900 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47553302-47558301 Glycine max
Glyma.20G244900 10.0kb upstream 10.0kb upstream 68639 true Chr20: 47484663-47553301 Glycine max
Glyma.20G244900 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47484663-47494662 Glycine max
Glyma.20G244900 10.0kb downstream 10.0kb downstream 68639 true Chr20: 47494663-47563301 Glycine max
Glyma.20G244900 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47553302-47563301 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303104 5265 Fabidae View MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.7601 0.0 45.1909    
cufflinks 14.7849 0.0 42.1023    
cufflinks 14.5511 0.0 41.5745    
cufflinks 19.8888 0.0 59.0089 High High
cufflinks 12.7368 0.0 35.5794    
cufflinks 8.65536 0.0 23.4789   Low
cufflinks 17.0475 0.0 49.2621    
cufflinks 14.5698 0.0 41.403    
cufflinks 11.3886 0.0 31.5253    
cufflinks 1.841        
cufflinks 2.086        
cufflinks 1.878        
cufflinks 1.533       Low
cufflinks 1.687       Low
cufflinks 2.111        
cufflinks 2.314       High
cufflinks 1.563       Low
cufflinks 2.4       High
cufflinks 2.402       High
cufflinks 2.043        
cufflinks 2.354       High
cufflinks 2.288        
cufflinks 2.012        
cufflinks 1.893        
cufflinks 2.019        
cufflinks 1.821        

0 Strain