Gene : Glyma.19G179100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10896:SF16 - BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED Genomic Order:  1791
Name:  ? Glyma.19G179100 Secondary Identifier:  ? PAC:30512583
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5800 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G179100 0.5kb upstream 0.5kb upstream 3272 true Chr19: 43824144-43827415 Glycine max
Glyma.19G179100 0.5kb upstream 0.5kb upstream 500 false Chr19: 43826916-43827415 Glycine max
Glyma.19G179100 0.5kb downstream 0.5kb downstream 3272 true Chr19: 43823644-43826915 Glycine max
Glyma.19G179100 0.5kb downstream 0.5kb downstream 500 false Chr19: 43823644-43824143 Glycine max
Glyma.19G179100 1.0kb upstream 1.0kb upstream 3772 true Chr19: 43824144-43827915 Glycine max
Glyma.19G179100 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43826916-43827915 Glycine max
Glyma.19G179100 1.0kb downstream 1.0kb downstream 3772 true Chr19: 43823144-43826915 Glycine max
Glyma.19G179100 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43823144-43824143 Glycine max
Glyma.19G179100 2.0kb upstream 2.0kb upstream 4772 true Chr19: 43824144-43828915 Glycine max
Glyma.19G179100 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43826916-43828915 Glycine max
Glyma.19G179100 2.0kb downstream 2.0kb downstream 4772 true Chr19: 43822144-43826915 Glycine max
Glyma.19G179100 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43822144-43824143 Glycine max
Glyma.19G179100 5.0kb upstream 5.0kb upstream 7772 true Chr19: 43824144-43831915 Glycine max
Glyma.19G179100 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43826916-43831915 Glycine max
Glyma.19G179100 5.0kb downstream 5.0kb downstream 7772 true Chr19: 43819144-43826915 Glycine max
Glyma.19G179100 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43819144-43824143 Glycine max
Glyma.19G179100 10.0kb upstream 10.0kb upstream 12772 true Chr19: 43824144-43836915 Glycine max
Glyma.19G179100 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43826916-43836915 Glycine max
Glyma.19G179100 10.0kb downstream 10.0kb downstream 12772 true Chr19: 43814144-43826915 Glycine max
Glyma.19G179100 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43814144-43824143 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040902 5273 Angiosperm View MSA
122301883 5265 Fabidae View MSA
124062732 5270 Rosid View MSA
123736974 5271 Pentapetalae View MSA
122787531 5272 Eudicot View MSA
121309764 5274 Embryophyte View MSA
123347429 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.5125 0.0 8.28041    
cufflinks 1.48241 0.0 5.16904    
cufflinks 1.54005 0.0 5.34991    
cufflinks 36.3712 0.0 98.2902 High High
cufflinks 3.98312 0.0 12.3072    
cufflinks 0.925844 0.0 3.34708   Low
cufflinks 5.79654 0.0 16.9896    
cufflinks 42.045 0.0 114.666 High High
cufflinks 7.3046 0.0 20.7717    
cufflinks 12.39     High High
cufflinks 0.285        
cufflinks 0.707        
cufflinks 3.114       High
cufflinks 0.482        
cufflinks 0.095       Low
cufflinks 1.054        
cufflinks 2.447       High
cufflinks 0.703        
cufflinks 1.118        
cufflinks 0.886        
cufflinks 0.319        
cufflinks 1.188        
cufflinks 0.806        
cufflinks 0.326        
cufflinks 0.903        
cufflinks 0.658        

0 Strain