Gene : Glyma.04G001200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10183//PTHR10183:SF323 - CALPAIN Genomic Order:  12
Name:  ? Glyma.04G001200 Secondary Identifier:  ? PAC:30487652
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G001200 0.5kb upstream 0.5kb upstream 5405 true Chr04: 106989-112393 Glycine max
Glyma.04G001200 0.5kb upstream 0.5kb upstream 500 false Chr04: 111894-112393 Glycine max
Glyma.04G001200 0.5kb downstream 0.5kb downstream 5405 true Chr04: 106489-111893 Glycine max
Glyma.04G001200 0.5kb downstream 0.5kb downstream 500 false Chr04: 106489-106988 Glycine max
Glyma.04G001200 1.0kb upstream 1.0kb upstream 5905 true Chr04: 106989-112893 Glycine max
Glyma.04G001200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 111894-112893 Glycine max
Glyma.04G001200 1.0kb downstream 1.0kb downstream 5905 true Chr04: 105989-111893 Glycine max
Glyma.04G001200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 105989-106988 Glycine max
Glyma.04G001200 2.0kb upstream 2.0kb upstream 6905 true Chr04: 106989-113893 Glycine max
Glyma.04G001200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 111894-113893 Glycine max
Glyma.04G001200 2.0kb downstream 2.0kb downstream 6905 true Chr04: 104989-111893 Glycine max
Glyma.04G001200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 104989-106988 Glycine max
Glyma.04G001200 5.0kb upstream 5.0kb upstream 9905 true Chr04: 106989-116893 Glycine max
Glyma.04G001200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 111894-116893 Glycine max
Glyma.04G001200 5.0kb downstream 5.0kb downstream 9905 true Chr04: 101989-111893 Glycine max
Glyma.04G001200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 101989-106988 Glycine max
Glyma.04G001200 10.0kb upstream 10.0kb upstream 14905 true Chr04: 106989-121893 Glycine max
Glyma.04G001200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 111894-121893 Glycine max
Glyma.04G001200 10.0kb downstream 10.0kb downstream 14905 true Chr04: 96989-111893 Glycine max
Glyma.04G001200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 96989-106988 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026886 5273 Angiosperm View MSA
122314813 5265 Fabidae View MSA
124070268 5270 Rosid View MSA
123742343 5271 Pentapetalae View MSA
122770269 5272 Eudicot View MSA
121348180 5274 Embryophyte View MSA
123427497 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.2535 0.0 135.184    
cufflinks 11.0221 0.0 109.126    
cufflinks 13.1147 0.0 150.161    
cufflinks 8.65998 0.0 87.9153    
cufflinks 9.35528 0.0 92.2097    
cufflinks 18.4604 0.0 147.958   High
cufflinks 6.84328 0.0 86.8791   Low
cufflinks 7.91477 0.0 82.0169    
cufflinks 10.1891 0.0 105.635    
cufflinks 0.183       Low
cufflinks 0.26        
cufflinks 0.52       High
cufflinks 0.265        
cufflinks 0.226        
cufflinks 0.218       Low
cufflinks 0.3        
cufflinks 0.209       Low
cufflinks 0.472       High
cufflinks 0.317        
cufflinks 0.325        
cufflinks 0.282        
cufflinks 0.376        
cufflinks 0.263        
cufflinks 0.297        
cufflinks 0.28        
cufflinks 0.271        

0 Strain