Gene : Glyma.03G145700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12313:SF14 - E3 UBIQUITIN-PROTEIN LIGASE RMA1-RELATED Genomic Order:  1457
Name:  ? Glyma.03G145700 Secondary Identifier:  ? PAC:30516930
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G145700 0.5kb upstream 0.5kb upstream 3053 true Chr03: 36109189-36112241 Glycine max
Glyma.03G145700 0.5kb upstream 0.5kb upstream 500 false Chr03: 36109189-36109688 Glycine max
Glyma.03G145700 0.5kb downstream 0.5kb downstream 3053 true Chr03: 36109689-36112741 Glycine max
Glyma.03G145700 0.5kb downstream 0.5kb downstream 500 false Chr03: 36112242-36112741 Glycine max
Glyma.03G145700 1.0kb upstream 1.0kb upstream 3553 true Chr03: 36108689-36112241 Glycine max
Glyma.03G145700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 36108689-36109688 Glycine max
Glyma.03G145700 1.0kb downstream 1.0kb downstream 3553 true Chr03: 36109689-36113241 Glycine max
Glyma.03G145700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 36112242-36113241 Glycine max
Glyma.03G145700 2.0kb upstream 2.0kb upstream 4553 true Chr03: 36107689-36112241 Glycine max
Glyma.03G145700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 36107689-36109688 Glycine max
Glyma.03G145700 2.0kb downstream 2.0kb downstream 4553 true Chr03: 36109689-36114241 Glycine max
Glyma.03G145700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 36112242-36114241 Glycine max
Glyma.03G145700 5.0kb upstream 5.0kb upstream 7553 true Chr03: 36104689-36112241 Glycine max
Glyma.03G145700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 36104689-36109688 Glycine max
Glyma.03G145700 5.0kb downstream 5.0kb downstream 7553 true Chr03: 36109689-36117241 Glycine max
Glyma.03G145700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 36112242-36117241 Glycine max
Glyma.03G145700 10.0kb upstream 10.0kb upstream 12553 true Chr03: 36099689-36112241 Glycine max
Glyma.03G145700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 36099689-36109688 Glycine max
Glyma.03G145700 10.0kb downstream 10.0kb downstream 12553 true Chr03: 36109689-36122241 Glycine max
Glyma.03G145700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 36112242-36122241 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302556 5265 Fabidae View MSA
124066632 5270 Rosid View MSA
123751390 5271 Pentapetalae View MSA
122773999 5272 Eudicot View MSA
122049096 5273 Angiosperm View MSA
121351369 5274 Embryophyte View MSA
123428652 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.0103 0.0 37.3821   High
cufflinks 9.52212 0.0 25.6696    
cufflinks 9.87898 0.0 26.5824    
cufflinks 11.1179 0.0 29.7835    
cufflinks 10.9808 0.0 29.4137    
cufflinks 12.8254 0.0 34.2468    
cufflinks 13.7219 0.0 36.618   High
cufflinks 11.3714 0.0 30.4393    
cufflinks 8.56273 0.0 23.189   Low
cufflinks 15.32     High  
cufflinks 30.784     High High
cufflinks 8.831     High Low
cufflinks 11.751     High  
cufflinks 8.3     High Low
cufflinks 13.259     High  
cufflinks 18.343     High  
cufflinks 27.305     High High
cufflinks 9.172     High Low
cufflinks 12.792     High  
cufflinks 14.576     High  
cufflinks 17.654     High  
cufflinks 15.987     High  
cufflinks 14.594     High  
cufflinks 27.615     High High
cufflinks 15.036     High  
cufflinks 24.577     High High

0 Strain