Gene : Glyma.03G157200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  1572
Name:  ? Glyma.03G157200 Secondary Identifier:  ? PAC:30515789
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G157200 0.5kb upstream 0.5kb upstream 8387 true Chr03: 37252852-37261238 Glycine max
Glyma.03G157200 0.5kb upstream 0.5kb upstream 500 false Chr03: 37252852-37253351 Glycine max
Glyma.03G157200 0.5kb downstream 0.5kb downstream 8387 true Chr03: 37253352-37261738 Glycine max
Glyma.03G157200 0.5kb downstream 0.5kb downstream 500 false Chr03: 37261239-37261738 Glycine max
Glyma.03G157200 1.0kb upstream 1.0kb upstream 8887 true Chr03: 37252352-37261238 Glycine max
Glyma.03G157200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37252352-37253351 Glycine max
Glyma.03G157200 1.0kb downstream 1.0kb downstream 8887 true Chr03: 37253352-37262238 Glycine max
Glyma.03G157200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37261239-37262238 Glycine max
Glyma.03G157200 2.0kb upstream 2.0kb upstream 9887 true Chr03: 37251352-37261238 Glycine max
Glyma.03G157200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37251352-37253351 Glycine max
Glyma.03G157200 2.0kb downstream 2.0kb downstream 9887 true Chr03: 37253352-37263238 Glycine max
Glyma.03G157200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37261239-37263238 Glycine max
Glyma.03G157200 5.0kb upstream 5.0kb upstream 12887 true Chr03: 37248352-37261238 Glycine max
Glyma.03G157200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37248352-37253351 Glycine max
Glyma.03G157200 5.0kb downstream 5.0kb downstream 12887 true Chr03: 37253352-37266238 Glycine max
Glyma.03G157200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37261239-37266238 Glycine max
Glyma.03G157200 10.0kb upstream 10.0kb upstream 17887 true Chr03: 37243352-37261238 Glycine max
Glyma.03G157200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37243352-37253351 Glycine max
Glyma.03G157200 10.0kb downstream 10.0kb downstream 17887 true Chr03: 37253352-37271238 Glycine max
Glyma.03G157200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37261239-37271238 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311802 5265 Fabidae View MSA
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.36084 0.0 25.5106    
cufflinks 7.84521 0.0 23.8869    
cufflinks 8.31319 0.0 28.5793    
cufflinks 6.33382 0.0 22.0654    
cufflinks 8.78091 0.0 30.309    
cufflinks 17.8421 0.0 65.2908   High
cufflinks 4.8646 0.0 17.5715   Low
cufflinks 12.4029 0.0 43.3667   High
cufflinks 6.07666 0.0 18.4374    
cufflinks 3.142       High
cufflinks 0.71       Low
cufflinks 1.783        
cufflinks 3.279       High
cufflinks 2.91        
cufflinks 0.812       Low
cufflinks 2.255        
cufflinks 0.941       Low
cufflinks 2.382        
cufflinks 2.572        
cufflinks 2.503        
cufflinks 1.094        
cufflinks 2.699        
cufflinks 2.189        
cufflinks 1.166        
cufflinks 2.366        
cufflinks 0.851       Low

0 Strain